Commits · f1471f47c5d1763e7355f6a5d3db0d7a220a2663 · Mutalyzer / mutalyzer2

10 Jul, 2013 1 commit
- Now we can find and substitute new uncanonical acids in protein_variant :) · f1471f47
  Alisa Muraveva authored Jul 10, 2013
```
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@713 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
```
  f1471f47
09 Jul, 2013 3 commits

delete end position of transl_excepy in variantchecker.pyand genbank.py · 8f5373dc
Alisa Muraveva authored Jul 09, 2013
```
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@712 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
```
8f5373dc

protein spliting after * in variantchecker.py · aecdbfd8

Alisa Muraveva authored Jul 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@711 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

aecdbfd8

* substitution in variantchecker.py · ee360d37

Alisa Muraveva authored Jul 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@710 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ee360d37

08 Jul, 2013 2 commits

some documentation added in variantchecker.py · c4baab90

Alisa Muraveva authored Jul 08, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@709 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c4baab90

Two functions to change txTables were added in variantchecker.py · 5414f36b

Alisa Muraveva authored Jul 08, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@708 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5414f36b

05 Jul, 2013 1 commit

create_exception was added in genbank.py file in right places · 127dca16

Alisa Muraveva authored Jul 05, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@707 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

127dca16

04 Jul, 2013 4 commits

create_exception function was added to genbank.py file · bf5b0efc

Alisa Muraveva authored Jul 04, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@706 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bf5b0efc

Fix order in post-install script · 94c9e8b0

Alisa Muraveva authored Jul 04, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@705 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

94c9e8b0

Merge trunk r702-703 · ea7c7ea5

Vermaat authored Jul 04, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@704 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ea7c7ea5

Fix missing fields in example config · e1aeaa14

Vermaat authored Jul 04, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@703 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e1aeaa14

03 Jul, 2013 1 commit

Start branch for Mobile 2013 summer project · 9765e855

Vermaat authored Jul 03, 2013


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mobile-2013@702 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

9765e855

18 Jun, 2013 2 commits

Open development for 2.0.beta-28 · 0bc53d34

Vermaat authored Jun 18, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@701 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

0bc53d34

Release 2.0.beta-27 · 5d42d883

Vermaat authored Jun 18, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@699 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5d42d883

12 Jun, 2013 1 commit

Limited cache lifetime for mrna-protein links · 5c5f8dea

Vermaat authored Jun 12, 2013

Rework the caching of transcript<->protein accession number links. If no
link is reported by the NCBI, this is now also cached. For these type of
negative links and the normal links, separate cache lifetimes can be
defined.

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@698 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

5c5f8dea

21 May, 2013 1 commit

Paper: exon deletions and fuzzy offsets · 4762914d

Vermaat authored May 21, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@697 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4762914d

09 Apr, 2013 5 commits

No weird instance attribute names starting with double underscore · 206c51d9
Vermaat authored Apr 09, 2013
```
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@694 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
```
206c51d9

Switch order of migrations 011 and 012 · 6a2299a3

Vermaat authored Apr 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@693 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6a2299a3

Open development for 2.0.beta-27 · fe567b67

Vermaat authored Apr 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@692 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

fe567b67

Release 2.0.beta-26 · 3076481a

Vermaat authored Apr 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@690 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3076481a

Add help link for each module in the web interface · 304a8ab5

Vermaat authored Apr 09, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@689 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

304a8ab5

08 Apr, 2013 1 commit

Proposal for student project: MoBiLe 2013 · 945a659b

Vermaat authored Apr 08, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@688 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

945a659b

26 Mar, 2013 3 commits

Keep service usage counts in database · 6000f9fa

Vermaat authored Mar 26, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@687 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

6000f9fa

Merge /branches/mapping-mouse:r682-684 · ab633aed

Vermaat authored Mar 26, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@685 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

ab633aed

Configure default mapping database · 3fbd64c5

Vermaat authored Mar 26, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@684 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3fbd64c5

25 Mar, 2013 9 commits

Add mm10 (Mouse) transcript mappings · d27bbd08

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@683 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

d27bbd08

Create mapping-mouse branch from trunk · 4052e854

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/mapping-mouse@682 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

4052e854

Merge /branches/lrg-schema-update:r653-679 · a5afeb94

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@680 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

a5afeb94

Update LRG parser for new format · 3e0f15b5

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/lrg-schema-update@679 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

3e0f15b5

Merge /trunk:r653-677 · 68c42247

Vermaat authored Mar 25, 2013


git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/lrg-schema-update@678 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

68c42247

Complete previous commit · c427e6ec

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@677 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c427e6ec

Transcript version update in unit tests · c519105f

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@676 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c519105f

Open development for 2.0.beta-26 · 24024e0e

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@675 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

24024e0e

Release 2.0.beta-25 · 1c240962

Vermaat authored Mar 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@673 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

1c240962

05 Mar, 2013 1 commit

Note that slicing by gene uses current assembly · 69a30937

Vermaat authored Mar 05, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@672 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

69a30937

25 Feb, 2013 1 commit

Warning on non-adjacent exons in transcript reference · bd3ce1d1

Vermaat authored Feb 25, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@671 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

bd3ce1d1

19 Feb, 2013 1 commit

Move documentation to Trac · e752fa3f

Vermaat authored Feb 19, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@670 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

e752fa3f

13 Feb, 2013 1 commit

Minor monitor update · 7ef7dc4a

Vermaat authored Feb 13, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@669 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

7ef7dc4a

12 Feb, 2013 2 commits

Include exon table for selected transcript in webservice · 8590f9b9

Vermaat authored Feb 12, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@668 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

8590f9b9

Use WNOMRNA_OTHER when appropriate (fixes #132) · c2b54871

Vermaat authored Feb 12, 2013

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@667 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1

c2b54871