Commits · ae7bb943094b834bb157dec150786f316947fd22 · Mutalyzer / mutalyzer2

07 Mar, 2019 1 commit
- Add tests for #468 · ae7bb943
  Mihai authored Mar 07, 2019
  
  ae7bb943
06 Mar, 2019 1 commit
- Perform the loci object creation in two iterations - fix for #468 · 5de7d131
  Mihai authored Mar 06, 2019
  
  5de7d131
04 Dec, 2018 7 commits
- Merge pull request #459 from mutalyzer/improve-user-feedback · 0c966b7d
  Mihai authored Dec 04, 2018
```
Improve user feedback
```
  0c966b7d
- Update broken external link (#454) · 2ab226e9
  Mihai authored Dec 04, 2018
  
  2ab226e9
- Fix typo in about page · 10b6cd67
  Mihai authored Dec 04, 2018
  
  10b6cd67
- Improved message when specific locus incorrectly specified · eda541fb
  Mihai authored Dec 04, 2018
  
  eda541fb
- Merge pull request #458 from mutalyzer/fix-441 · 026a1a97
  Mihai authored Dec 04, 2018
```
Fix for #441
```
  026a1a97
- Fix for #441 · 1c493f5a
  Mihai authored Dec 04, 2018
  
  1c493f5a
- Merge pull request #457 from mutalyzer/update-requirements · dfd68fde
  Mihai authored Dec 04, 2018
```
Update requirements
```
  dfd68fde
03 Dec, 2018 11 commits
- Update lxml to 4.2.5 · 5c79fd22
  Mihai authored Dec 03, 2018
  
  5c79fd22
- Update Werkzeug to 0.14.1 · d8f3a579
  Mihai authored Dec 03, 2018
  
  d8f3a579
- Update alembic to 1.0.5 and chardet to 3.0.4 · c46f29d5
  Mihai authored Dec 03, 2018
  
  c46f29d5
- Update spyne to 2.12.14 · 25011a82
  Mihai authored Dec 03, 2018
  
  25011a82
- Update SQLAlchemy to 1.2.14 · d986f98e
  Mihai authored Dec 03, 2018
  
  d986f98e
- Update PyYAML to 3.13 · 54882748
  Mihai authored Dec 03, 2018
  
  54882748
- Update Jinja2 to 2.10 · 53ec8796
  Mihai authored Dec 03, 2018
  
  53ec8796
- Update biopython to 1.72 · f4b64a88
  Mihai authored Dec 03, 2018
  
  f4b64a88
- Update requests to 2.20.1 · 660f56ba
  Mihai authored Dec 03, 2018
  
  660f56ba
- Update Flask to 0.12.14 · 64a884e8
  Mihai authored Dec 03, 2018
  
  64a884e8
- Merge pull request #456 from mutalyzer/consistent-api-with-ud · 0f431585
  Mihai authored Dec 03, 2018
```
Consistent api with ud
```
  0f431585
26 Sep, 2018 1 commit
- Add support for other RNAs. · 40cad900
  Mihai authored Sep 26, 2018
  
  40cad900
20 Jun, 2018 1 commit
- Make API more consistent between UDs and NCs · c749ecfb
  Mihai authored Jun 20, 2018
  
  c749ecfb
14 Jun, 2018 2 commits
- Merge pull request #452 from mutalyzer/fix-436 · d2e09cce
  Mihai authored Jun 14, 2018
```
Fix for #436
```
  d2e09cce
- Fix for #436 · b455d8f1
  Mihai authored Jun 14, 2018
  
  b455d8f1
11 Jun, 2018 6 commits
- Merge pull request #450 from mutalyzer/release-2.0.28 · f8b28275
  Mihai authored Jun 11, 2018
```
Release 2.0.28
```
  f8b28275
- Open development for 2.0.29 · f86f087c
  Mihai authored Jun 11, 2018
  
  f86f087c
- Bump version to 2.0.28 · cf0c28b1
  Mihai authored Jun 11, 2018
  
  cf0c28b1
- Update changelog · 240142de
  Mihai authored Jun 11, 2018
  
  240142de
- Merge pull request #449 from mutalyzer/new-lrg-location · 73a3feef
  Mihai authored Jun 11, 2018
```
Support for LRG 1.9
```
  73a3feef
- Support for LRG 1.9 · 5d54d4f5
  Mihai authored Jun 04, 2018
```
- Switch to new LRG location (fix for #447).
- Extract only the gene name from the `updatable` section.
- Fix for LRG transcripts with no coding region.
- Adapted LRG examples on the website.
- Extract the annotation set based on attribute type.
- More informative error message (part of #135).
- Makes #338 obsolete.
```
  5d54d4f5
25 May, 2018 4 commits
- Merge pull request #446 from mutalyzer/release-2.0.27 · 1d3b1341
  Mihai authored May 25, 2018
```
Release 2.0.27
```
  1d3b1341
- Open development for 2.0.28 · a17bb607
  Mihai authored May 25, 2018
  
  a17bb607
- Bump version to 2.0.27 · aa555ae4
  Mihai authored May 25, 2018
  
  aa555ae4
- Update changelog · 0339cda5
  Mihai authored May 25, 2018
  
  0339cda5
24 May, 2018 4 commits
- Accepting variant descriptions with NC files as references (#445) · 5ed6845c
  Mihai authored May 24, 2018
  
  5ed6845c
- Removed support for pending LRG reference files. (#444) · 312d5750
  Mihai authored May 24, 2018
  
  312d5750
- Add info messages in case of errors (#443) · 52227eb7
  Mihai authored May 24, 2018
  
  52227eb7
- Merge pull request #442 from mutalyzer/batch-processor-timeout · 9316622e
  Mihai authored May 24, 2018
```
Set default timeout for the batch processor
```
  9316622e
09 Feb, 2018 1 commit
- Set default timeout of 60s for the batch processor · 9f5b968b
  Mihai authored Feb 09, 2018
  
  9f5b968b
17 Jan, 2018 1 commit
- Merge pull request #439 from mutalyzer/fix-slice-chromosome-ncbi · 1575ab78
  Mihai authored Jan 17, 2018
```
Large references (chromosomes) slicing
```
  1575ab78