Commit 028f66b7 authored by Vermaat's avatar Vermaat
Browse files

Rename 'webservice' to 'web service' (for Peter)

git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@601 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
parent 690bf53d
......@@ -20,7 +20,7 @@ Unit tests
----------
The unit tests depend on a running batch daemon, webserver, and SOAP
webservice:
web service:
sudo /etc/init.d/mutalyzer-batchd start
sudo /etc/init.d/apache2 start
......@@ -135,8 +135,8 @@ Todo list:
for example jinja.
- Develop a large test suite.
- Create a web interface url to watch the progress of a batch job.
- Create webservices for the batch jobs (steal ideas from Jeroen's DVD
webservice).
- Create web services for the batch jobs (steal ideas from Jeroen's DVD
web service).
- Use virtualenv?
- Use SQLAlchemy?
- Password for MySQL user.
......
#!/usr/bin/env python
"""
WSGI interface to the Mutalyzer HTTP/RPC+JSON webservice.
WSGI interface to the Mutalyzer HTTP/RPC+JSON web service.
The WSGI interface is exposed through the module variable 'application'.
......
#!/usr/bin/env python
"""
WSGI interface to the Mutalyzer SOAP webservice.
WSGI interface to the Mutalyzer SOAP web service.
The WSGI interface is exposed through the module variable 'application'.
......
......@@ -11,7 +11,7 @@ Alias /mutalyzer/base /var/www/mutalyzer/base
WSGIDaemonProcess mutalyzer processes=2 threads=15 maximum-requests=10000
WSGIProcessGroup mutalyzer
# SOAP/1.1 webservice
# SOAP/1.1 web service
WSGIScriptAlias /mutalyzer/services <MUTALYZER_BIN_SOAP_SERVICE>
<Directory /mutalyzer/services>
Order deny,allow
......@@ -19,7 +19,7 @@ WSGIScriptAlias /mutalyzer/services <MUTALYZER_BIN_SOAP_SERVICE>
Options -Indexes
</Directory>
# HTTP/RPC+JSON webservice
# HTTP/RPC+JSON web service
WSGIScriptAlias /mutalyzer/json <MUTALYZER_BIN_JSON_SERVICE>
<Directory /mutalyzer/json>
Order deny,allow
......
#!/bin/bash
# Add HTTP/RPC+JSON webservice entry to Apache configuration.
# Add HTTP/RPC+JSON web service entry to Apache configuration.
#
# Usage:
# ./007-apache-json-webservice.migration [migrate]
......
......@@ -7,8 +7,8 @@ Usage:
description: Variant description to check.
The syntaxchecker results are retrieved from the Mutalyzer SOAP webservice and
printed to standard output.
The syntaxchecker results are retrieved from the Mutalyzer SOAP web service
and printed to standard output.
"""
......
......@@ -8,7 +8,7 @@ Usage:
chromosome: Chromosome to get accession number for, e.g. 'chr2'.
build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
The accession number is retrieved from the Mutalyzer SOAP webservice and
The accession number is retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -9,8 +9,8 @@ Usage:
reference: Reference DNA sequence.
observed: Observed DNA sequence.
The extracted HGVS description is retrieved from the Mutalyzer SOAP webservice
and printed to standard output.
The extracted HGVS description is retrieved from the Mutalyzer SOAP web
service and printed to standard output.
"""
......
......@@ -7,8 +7,8 @@ Usage:
days: Retrieve entries of at most this number of days old.
The cache entries are retrieved from the Mutalyzer SOAP webservice and printed
to standard output.
The cache entries are retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -9,7 +9,7 @@ Usage:
transcript_reference: Reference of the transcript to lookup.
The transcript and product name are retrieved from the Mutalyzer SOAP
webservice and printed to standard output.
web service and printed to standard output.
"""
......
......@@ -9,7 +9,7 @@ Usage:
position: Position to lookup overlapping transcripts for.
The transcript accession numbers are retrieved from the Mutalyzer SOAP
webservice and printed to standard output.
web service and printed to standard output.
"""
......
......@@ -9,8 +9,8 @@ Usage:
example 'AL449423.14'.
gene: Optionally restrict results to transcripts for this gene.
The transcript information is retrieved from the Mutalyzer SOAP webservice and
printed to standard output.
The transcript information is retrieved from the Mutalyzer SOAP web service
and printed to standard output.
"""
......
......@@ -8,7 +8,7 @@ Usage:
gene: Gene name to lookup transcripts for.
The transcript accession numbers are retrieved from the Mutalyzer SOAP
webservice and printed to standard output.
web service and printed to standard output.
"""
......
......@@ -11,8 +11,8 @@ Usage:
pos2: End of chromosomal region, e.g. 230938269.
tolerant: Optionally set region matching to be tolerant, e.g. 1.
The transcript information is retrieved from the Mutalyzer SOAP webservice and
printed to standard output.
The transcript information is retrieved from the Mutalyzer SOAP web service
and printed to standard output.
"""
......
......@@ -7,7 +7,7 @@ Usage:
rs_number: A valid dbSNP rs number, e.g. 'rs9919552'.
The HGVS descriptions are retrieved from the Mutalyzer SOAP webservice and
The HGVS descriptions are retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -5,7 +5,7 @@ Get static version information from a Mutalyzer installation.
Usage:
{command}
The version information is retrieved from the Mutalyzer SOAP webservice and
The version information is retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -9,7 +9,7 @@ Usage:
variant: Variant to map, e.g. 'g.112039014G>T'.
build: Human genome build, 'hg18' or 'hg19' (default: 'hg19').
The mapping information is retrieved from the Mutalyzer SOAP webservice and
The mapping information is retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -9,7 +9,7 @@ Usage:
description: Variant description to convert.
The converted HGVS description(s) is (are) retrieved from the Mutalyzer SOAP
webservice and printed to standard output.
web service and printed to standard output.
"""
......
......@@ -8,7 +8,7 @@ Usage:
description: Variant description to check.
verbosity: If 'verbose', also output full original and variant sequences.
The namechecker results are retrieved from the Mutalyzer SOAP webservice and
The namechecker results are retrieved from the Mutalyzer SOAP web service and
printed to standard output.
"""
......
......@@ -8,7 +8,7 @@ Usage:
gene: Gene symbol of the gene to slice.
A slice containing the gene with 5000 upstream bases and 2000 downstream bases
is created with the Mutalyzer SOAP webservice. The resulting UD number is
is created with the Mutalyzer SOAP web service. The resulting UD number is
printed to standard output.
"""
......
Supports Markdown
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment