• Gerben Stouten's avatar
    Major fix for the batch runs · 808ea897
    Gerben Stouten authored
    Mutalyzer.py
        * Updated the batch output generator
    
    handler.py
        * Make result file downloadable
    
    webservice.py
        * Make webservice compatible with the new Mapper module
    
    VarInfo.py
        * Updated functions to reflect new Mapper module
    
    index.py
        * Added a redirect option to move get messages to the check form
        * Updated check to use the Session from redirect
        * implented __checkInt to catch user errors in upload
        * Added a progress option to get updates about batch progress
        * updated batch to show batch progress after submit
    
    #Templates
    interface.js
        * Added the AJAX request to get a batch progress counter
        * Started the linkify to change all Mutalyzer instances to clickable links
    
    batch.html
        * Added a hidden form to support the batch progress
    
    gbupload.html
        * Display Errors 
    
    
    
    #Modules
    Output.py
        * Added the getMessagesWithErrorCode
    
    LRGParser.py
        * Made the seq a BioSequence for the restriction function
    
    Retriever.py
        * Added BatchFlags support to prevent jobs to hang at the same problem
        * Updated some returnvalues to reflect errors
    
    Scheduler.py
        * Implemented the Flags to skip or alter other batch entries
        * Cleaned up the nameCheckerbatch significantly
        * Added a try/except clause around the namechecker to prevent batchhangs
        * Changed output fileextension to txt
    
    Mapper.py
        * Cleaned up Module
        * mainTranscript function updated to reflect webservice needs
        * Correct errors when retrieving fields from DB in _FieldsFromDb
    
    Db.py
        * Impemented entriesLeftForJob to get info about how a job is doing
        * Added updateBatchDb and skipBatchDb to skip/alter batch entries
    
    
    
    
    git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@71 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
    808ea897