homepage.html 5.3 KB
Newer Older
Vermaat's avatar
Vermaat committed
1
{% extends "base.html" %}
2

Vermaat's avatar
Vermaat committed
3
4
{% set active_page = "homepage" %}
{% set page_title = "Welcome to the Mutalyzer website" %}
5

Vermaat's avatar
Vermaat committed
6
7
8
9
10
11
12
13
14
{% block content %}

<p>
The aim of this program suite is to support checks of sequence variant
nomenclature according to the
<a href="http://www.hgvs.org/mutnomen/">guidelines</a> of the
<a href="http://www.hgvs.org">Human Genome Variation Society</a>.
</p>

Jeroen Laros's avatar
Jeroen Laros committed
15
<div class="row">
16
    <div class="col-md-12">
17
        <div class="thumbnail clickbox thumb-home thumb-large">
18
            <div class="caption">
19
                <h3><a href="{{ url_for('.name_checker') }}">Name Checker</a></h3>
20
                <p>The Name Checker takes the complete sequence variant description as input and checks whether it is correct.</p>
21
22
23
24
                <p>Examples:
                  <code class="example-input" data-for="description">AB026906.1:c.274G&gt;T</code>,
                  <code class="example-input" data-for="description">NG_012337.1(SDHD_v001):c.274G&gt;T</code>
                </p>
25
26
27
28
29
30

                <!-- <a href="{{ url_for('.name_checker') }}" class="btn btn-default btn-small btn-primary">Try
                this</a> -->

                <form class="form" action="{{ url_for('.name_checker') }}" method="get">
                    <div class="input-group">
Vermaat's avatar
Vermaat committed
31
                        <input class="form-control form-control-small form-pre" type="text" name="description" id="description" value="{{ description }}" placeholder="Variant description using HGVS format">
32
                        <span class="input-group-btn">
Vermaat's avatar
Vermaat committed
33
                            <input type="submit" class="btn btn-primary pull-right" value="Check variant description">
34
35
36
37
38
39
40
                        </span>
                    </div>
                </form>

            </div>
        </div>
    </div>
Jeroen Laros's avatar
Jeroen Laros committed
41
42
43
</div>

<div class="row">
44
45
46
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-1">
            <div class="caption">
Vermaat's avatar
Vermaat committed
47
48
                <h3><a href="{{ url_for('.syntax_checker') }}">Syntax Checker</a></h3>
                <p>Takes the complete sequence variant description as input and checks whether the syntax is correct.</p>
49
50
51
52
53
54
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-2">
            <div class="caption">
Vermaat's avatar
Vermaat committed
55
56
                <h3><a href="{{ url_for('.position_converter') }}">Position Converter</a></h3>
                <p>Converts chromosomal positions to transcript orientated positions and vice versa.</p>
57
58
59
60
61
62
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-3">
            <div class="caption">
Vermaat's avatar
Vermaat committed
63
64
                <h3><a href="{{ url_for('.snp_converter') }}">SNP Converter</a></h3>
                <p>Allows you to convert a dbSNP rsId to HGVS notation.</p>
65
66
67
68
69
70
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-4">
            <div class="caption">
Vermaat's avatar
Vermaat committed
71
72
                <h3><a href="{{ url_for('.name_generator') }}">Name Generator</a></h3>
                <p>A user friendly interface that helps to make a valid HGVS variant description.</p>
73
74
75
            </div>
        </div>
    </div>
Jeroen Laros's avatar
Jeroen Laros committed
76
77
78
</div>

<div class="row">
79
80
81
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-5">
            <div class="caption">
Vermaat's avatar
Vermaat committed
82
83
                <h3><a href="{{ url_for('.description_extractor') }}">Description Extractor</a></h3>
                <p>Allows you to generate the HGVS variant description from a reference sequence and an observed sequence.</p>
84
85
86
87
88
89
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-6">
            <div class="caption">
Vermaat's avatar
Vermaat committed
90
91
                <h3><a href="{{ url_for('.reference_loader') }}">Reference File Loader</a></h3>
                <p>Allows you to load and use your own reference sequence.</p>
92
93
94
95
96
97
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-7">
            <div class="caption">
Vermaat's avatar
Vermaat committed
98
99
                <h3><a href="{{ url_for('.batch_jobs') }}">Batch Checkers</a></h3>
                <p>Interfaces accepting a list of inputs that can be used for large quantities of checks.</p>
100
101
102
103
104
105
            </div>
        </div>
    </div>
    <div class="col-md-3">
        <div class="thumbnail thumb-home clickbox color-8">
            <div class="caption">
Vermaat's avatar
Vermaat committed
106
107
                <h3><a href="{{ url_for('.webservices') }}">Web Services</a></h3>
                <p>Provides instructions for the web services.</p>
108
109
110
            </div>
        </div>
    </div>
Jeroen Laros's avatar
Jeroen Laros committed
111
112
113
114
</div>


<!--
Vermaat's avatar
Vermaat committed
115
<ul>
Jeroen Laros's avatar
Jeroen Laros committed
116
117
118


</ul> -->
Vermaat's avatar
Vermaat committed
119
120

<p>
Jeroen Laros's avatar
Jeroen Laros committed
121
GenBank sequences are retrieved from the <a href="http://www.ncbi.nlm.nih.gov/">NCBI</a> (<a href="http://eutils.ncbi.nlm.nih.gov/About/disclaimer.html" >Copyright and Disclaimers</a>).
Vermaat's avatar
Vermaat committed
122
123
124
</p>

<p>
Jeroen Laros's avatar
Jeroen Laros committed
125
This project is sponsored by <a href = "http://www.sun.com">SUN Microsystems</a> with server hardware within the scope of the Academic Excellence Grant (AEG) program (award EDUD-7832-080223-CNE).
Vermaat's avatar
Vermaat committed
126
127
</p>

Jeroen Laros's avatar
Jeroen Laros committed
128
<script>
129
    $(document).on('click', ".clickbox", function(e){
130
         window.location=$(this).find("a").attr("href");
131
132
         e.preventDefault();
         e.stopPropagation();
133
    });
134
    $(document).on('click', ".clickbox input", function(e){
135
136
         e.stopPropagation();
    });
Jeroen Laros's avatar
Jeroen Laros committed
137
138
</script>

Vermaat's avatar
Vermaat committed
139
{% endblock content %}