diff --git a/mutalyzer/grammar.py b/mutalyzer/grammar.py index a8a987d110ed7c4dc95b7cf78cccb71393aa6f7d..0e65ec574822f0182ee4d1eb0abe6accb548161d 100644 --- a/mutalyzer/grammar.py +++ b/mutalyzer/grammar.py @@ -78,8 +78,11 @@ class Grammar(): # BNF: ProtIso -> `_i' Number ProtIso = Suppress('_i') + Number('ProtIso') + # BNF: GeneName -> ([a-Z] | [0-9] | `-')+ + GeneName = Word(alphanums + '-', min=1) + # BNF: GeneSymbol -> `(' Name (TransVar | ProtIso)? `)' - GeneSymbol = Suppress('(') + Group(Name('GeneSymbol') + \ + GeneSymbol = Suppress('(') + Group(GeneName('GeneSymbol') + \ Optional(TransVar ^ ProtIso))('Gene') + Suppress(')') # BNF: GI -> (`GI' | `GI:')? Number