From e86fe74fb268f5f9261f85f8d7d4d7333ad132f2 Mon Sep 17 00:00:00 2001
From: "J.F.J. Laros" <j.f.j.laros@lumc.nl>
Date: Fri, 25 Jul 2014 23:50:47 +0200
Subject: [PATCH] Small modification to accommodate for the refactored
extractor library.
---
mutalyzer/describe.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/mutalyzer/describe.py b/mutalyzer/describe.py
index 194179fe..43dd894f 100644
--- a/mutalyzer/describe.py
+++ b/mutalyzer/describe.py
@@ -633,7 +633,7 @@ def describe(s1, s2, dna=True):
#if
if in_transposition:
- if variant.type & extractor.IDENTITY:
+ if not variant.type:
seq_list.append(Seq(#reference=s1,
start=variant.sample_start + 1, end=variant.sample_end,
reverse=False))
@@ -645,7 +645,7 @@ def describe(s1, s2, dna=True):
seq_list.append(Seq(
sequence=s2[variant.sample_start:variant.sample_end]))
#if
- elif not (variant.type & extractor.IDENTITY):
+ elif variant.type:
description.append(var_to_rawvar(s1, s2, variant, dna=dna))
if variant.type & extractor.TRANSPOSITION_CLOSE:
--
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