From e4fc3c5cdb5e164ef9356e0c97e22a6a18fe99f5 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Fri, 4 Jul 2014 15:50:43 +0200
Subject: [PATCH] Update changelog
---
CHANGES.rst | 102 +++++++++++++++++++++++++++++++++++++++++++++++++++-
1 file changed, 101 insertions(+), 1 deletion(-)
diff --git a/CHANGES.rst b/CHANGES.rst
index d4867e50..8bb69f93 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -4,10 +4,110 @@ Changelog
This is a record of changes made between each Mutalyzer release.
+Version 2.0.0
+-------------
+
+Release date to be decided.
+
+This release does not bring many new features, but comes with significant
+changes to the technical infrastructure. `Merge request #6
+<https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/6>`_ tracks most of
+this.
+
+Some highlights especially users of the webservices should be aware of:
+
+- HTTP/RPC+JSON webservice has changed response format (wrapper object
+ removed). See below for an :ref:`example <changelog_200_example>`.
+- No more plain HTTP access, only redirects to HTTPS.
+- Many website entrypoints have changed URLs and form parameter names (the old
+ ones have HTTP redirects).
+- Removed old redirects from paths starting with ``/2.0/``.
+- In maintenance mode, all requests get a *Service Temporarily Unavailable*
+ response with status code 503.
+
+Other changes:
+
+- Fix running Mutalyzer in a `virtual environment
+ <http://virtualenv.readthedocs.org/>`_ and have an up-to-date
+ ``requirements.txt`` for `pip <http://pip.readthedocs.org/>`_ (`#4
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/4>`_).
+- Switch from TAL to Jinja2 (`#3
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/3>`_).
+- Refactor user interfaces (`#5
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/5>`_).
+- Move from configobj to Python module based config (`#7
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/7>`_).
+- Use SQLAlchemy as ORM (`#8
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/8>`_).
+- Use Redis for stat counters (`#10
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/10>`_).
+- Port website from web.py to Flask (`#11
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/11>`_).
+- Isolated unit tests using fixtures and an in-memory database (`#12
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/12>`_).
+- Display announcement on website (`#14
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/14>`_).
+- Database migrations with Alembic (`#15
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/15>`_).
+- Update documentation and use Sphinx (`#16
+ <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/16>`_).
+- Move to `semantic versioning <http://semver.org/>`_, starting with version
+ 2.0.0 (`#22 <https://git.lumc.nl/mutalyzer/mutalyzer/merge_requests/22>`_).
+- Add 404 not found page.
+- Don't auto remove comma characters in syntax checker.
+- Add a dash (``-``) as an allowed character in the gene name.
+- Range, reverse complement range, and compound
+ insertions/insertion-deletions.
+
+.. _changelog_200_example:
+
+The wrapper object has been removed from the HTTP/RPC+JSON webservice response
+format. As an example, consider an old response format for the `checkSyntax`
+method:
+
+.. code-block:: json
+
+ {
+ "checkSyntaxResponse": {
+ "checkSyntaxResult": {
+ "valid": true,
+ "messages": {
+ "SoapMessage": []
+ }
+ }
+ }
+ }
+
+The new response format is:
+
+.. code-block:: json
+
+ {
+ "valid": true,
+ "messages": []
+ }
+
+
+
+Version 2.0.beta-32
+-------------------
+
+Released on June 26th 2014.
+
+ * Link to `Visual interface for Variant Description Extractor
+ <https://humgenprojects.lumc.nl/trac/mutalyzer/wiki/News/2014-06-26-visual-interface>`_
+ announcement.
+
+
Version 2.0.beta-31
-------------------
-Release date to be decided.
+Released on March 27th 2014.
+
+- Due to incorrect interpretation, temporarily only support one CDS per
+ transcript (ignore all others) in LRG.
+- Due to incorrect interpretation, temporarily ignore transcripts without a
+ fixed id.
Version 2.0.beta-30
--
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