From d9a5d0a8bf1c15610240ccb4c439b23aac5fd92b Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Fri, 8 Apr 2011 10:58:18 +0000
Subject: [PATCH] Removed dead configuration options.
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@261 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
extras/config.example | 9 ---------
mutalyzer/config.py | 3 ---
2 files changed, 12 deletions(-)
diff --git a/extras/config.example b/extras/config.example
index 89c500b0..dfc8a135 100644
--- a/extras/config.example
+++ b/extras/config.example
@@ -97,9 +97,6 @@ flankclipsize = 6
# These settings are used by the Scheduler module.
#
-# Name of the batch process.
-processName = "MutalyzerBatch2"
-
# Return e-mail address.
mailFrom = "noreply@humgen.nl"
@@ -146,12 +143,6 @@ threshold = 0.05
# These settings are used by the GenRecord module.
#
-# Number of upstream nucleotides when searching for a transcript.
-upstream = 5000
-
-# Number of downstream nucleotides when searching for a transcript.
-downstream = 2000
-
spliceAlarm = 2
spliceWarn = 5
diff --git a/mutalyzer/config.py b/mutalyzer/config.py
index fe898a3e..f58075ec 100644
--- a/mutalyzer/config.py
+++ b/mutalyzer/config.py
@@ -111,7 +111,6 @@ class Config():
self.Mutator.flankclipsize = int(config["flankclipsize"])
# Set the variables needed by the Scheduler module.
- self.Scheduler.processName = config["processName"]
self.Scheduler.mailFrom = config["mailFrom"]
self.Scheduler.mailSubject = config["mailSubject"]
self.Scheduler.resultsDir = config["resultsDir"]
@@ -133,8 +132,6 @@ class Config():
self.GBparser.email = config["email"]
# Set the variables needed by the File module.
- #self.File.upstream = int(config["upstream"])
- #self.File.downstream = int(config["downstream"])
self.GenRecord.spliceAlarm = int(config["spliceAlarm"])
self.GenRecord.spliceWarn = int(config["spliceWarn"])
--
GitLab