From b2462caceac866901d5fa178197897cb9d063156 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Fri, 3 Jan 2014 22:13:03 +0100
Subject: [PATCH] Cleanup HTML forms in templates
---
mutalyzer/templates/batch_jobs.html | 21 ++-----
.../templates/description_extractor.html | 18 ++----
mutalyzer/templates/name_checker.html | 12 +---
mutalyzer/templates/position_converter.html | 14 ++---
mutalyzer/templates/reference_loader.html | 55 ++++++++-----------
mutalyzer/templates/snp_converter.html | 16 ++----
mutalyzer/templates/syntax_checker.html | 15 ++---
mutalyzer/templates/test.js | 2 -
8 files changed, 47 insertions(+), 106 deletions(-)
delete mode 100644 mutalyzer/templates/test.js
diff --git a/mutalyzer/templates/batch_jobs.html b/mutalyzer/templates/batch_jobs.html
index 75f76115..1f6fd9cb 100644
--- a/mutalyzer/templates/batch_jobs.html
+++ b/mutalyzer/templates/batch_jobs.html
@@ -67,7 +67,7 @@
</div>
<table id="inputform">
- <form action = "" method = "post" enctype = "multipart/form-data">
+ <form action="" method="post" enctype="multipart/form-data">
<tr id="batchRow">
<td><b>BatchType</b></td>
<td>
@@ -94,16 +94,11 @@
</tr>
<tr>
<td><b>Email</b></td>
- <td><input type = "text"
- name = "batchEmail"
- value="{{ lastpost|e }}"
- style = "width:200px"></td>
+ <td><input type="text" name="batchEmail" value="{{ lastpost|e }}" style="width:200px"></td>
</tr>
<tr>
<td><b>File</b></td>
- <td><input type = "file"
- name = "batchFile"
- style = "width:200px"></td>
+ <td><input type="file" name="batchFile" style="width:200px"></td>
</tr>
<tr>
<td colspan="2">
@@ -153,14 +148,8 @@ window.onload = initpage;
</div>
{% if resultID %}
<div id="percent">Your job is in progress and currently at 0%</div>
- <input id = "resultID"
- type = "hidden"
- name = "resultID"
- value = "{{ resultID|e }}">
- <input id = "totalJobs"
- type = "hidden"
- name = "totalJobs"
- value = "{{ totalJobs|e }}">
+ <input id="resultID" type="hidden" name="resultID" value="{{ resultID|e }}">
+ <input id="totalJobs" type="hidden" name="totalJobs" value="{{ totalJobs|e }}">
{% endif %}
{% endif %}
diff --git a/mutalyzer/templates/description_extractor.html b/mutalyzer/templates/description_extractor.html
index 7d2b5c11..61d1be09 100644
--- a/mutalyzer/templates/description_extractor.html
+++ b/mutalyzer/templates/description_extractor.html
@@ -31,7 +31,7 @@ algorithm for:
</ul>
<div style="border: 1px solid grey; background-color: aliceblue; padding: 20px;">
- <form action = "" method = "post">
+ <form action="" method="post">
Please supply a reference sequence and an observed sequence.<br>
<br>
<div style="border: 1px solid grey; padding: 20px">
@@ -39,12 +39,7 @@ algorithm for:
<br>
Example: <tt>ATGATGATCAGATACAGTGTGATACAGGTAGTTAGACAA</tt><br>
<br>
- <input
- type = "text"
- name = "referenceSeq"
- value = "{{ lastReferenceSeq|e }}"
- style = "width:100%"
- ><br>
+ <input type="text" name="referenceSeq" value="{{ lastReferenceSeq|e }}" style="width:100%"><br>
<input type="button" value="Clear field" onclick="clearField(this.form, 'referenceSeq');">
</div>
<br>
@@ -53,12 +48,7 @@ algorithm for:
<br>
Example: <tt>ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA</tt><br>
<br>
- <input
- type = "text"
- name = "variantSeq"
- value = "{{ lastVariantSeq|e }}"
- style = "width:100%"
- ><br>
+ <input type="text" name="variantSeq" value="{{ lastVariantSeq|e }}" style="width:100%"><br>
<input type="button" value="Clear field" onclick="clearField(this.form, 'variantSeq');">
</div>
<br>
@@ -87,7 +77,7 @@ algorithm for:
<p>
<b>Overview of the raw variants:</b>
</p>
- <table class = "laTable">
+ <table class="laTable">
<tr>
<td>Start</td>
<td>End</td>
diff --git a/mutalyzer/templates/name_checker.html b/mutalyzer/templates/name_checker.html
index 8465c4db..010697cb 100644
--- a/mutalyzer/templates/name_checker.html
+++ b/mutalyzer/templates/name_checker.html
@@ -29,16 +29,10 @@
</div><br>
Example: AB026906.1:c.274G>T<br>
<br>
- <form action = "" method = "get">
- <input
- type = "text"
- name = "name"
- value = "{{ name|e }}"
- style = "width:100%"
- ><br>
+ <form action="" method="get">
+ <input type="text" name="name" value="{{ name|e }}" style="width:100%"><br>
<input type="submit" value="Submit">
- <input type="button" value="Clear field"
- onclick="clearField(this.form, 'name');">
+ <input type="button" value="Clear field" onclick="clearField(this.form, 'name');">
<a href="https://humgenprojects.lumc.nl/trac/mutalyzer/wiki/NameChecker">Help</a>
</form>
</div>
diff --git a/mutalyzer/templates/position_converter.html b/mutalyzer/templates/position_converter.html
index 81bbb939..d8485012 100644
--- a/mutalyzer/templates/position_converter.html
+++ b/mutalyzer/templates/position_converter.html
@@ -21,15 +21,13 @@
or: NC_000011.9:g.111959693G>T<br>
</p>
<table id="inputform">
- <form action = "" method = "post" enctype = "multipart/form-data">
+ <form action="" method="post" enctype="multipart/form-data">
<tr>
<td><b>Build</b></td>
<div>{{ build|e }}</div>
<td>
<select name="build">
- <option
- selected="selected"
- value="{{ selected_build|e }}">{{ selected_build|e }}</option>
+ <option selected="selected" value="{{ selected_build|e }}">{{ selected_build|e }}</option>
{% for i in unselected_builds %}
<option value="{{ i|e }}">{{ i|e }}</option>
{% endfor %}
@@ -38,16 +36,12 @@
</tr>
<tr>
<td><b>Variant</b></td>
- <td><input type = "text"
- name = "variant"
- value = "{{ variant|e }}"
- style = "width:500px"></td>
+ <td><input type="text" name="variant" value="{{ variant|e }}" style="width:500px"></td>
</tr>
<tr>
<td colspan="2">
<input type="submit" value="Submit">
- <input type="button" value="Clear field"
- onclick="clearField(this.form, 'variant');">
+ <input type="button" value="Clear field" onclick="clearField(this.form, 'variant');">
<a href="https://humgenprojects.lumc.nl/trac/mutalyzer/wiki/PositionConverter">Help</a>
</td>
diff --git a/mutalyzer/templates/reference_loader.html b/mutalyzer/templates/reference_loader.html
index b49476d8..ab32e135 100644
--- a/mutalyzer/templates/reference_loader.html
+++ b/mutalyzer/templates/reference_loader.html
@@ -22,26 +22,20 @@ Please select one of the options below to upload or retrieve your reference
sequence (maximum size is {{ maxSize|e }} megabytes):
</p>
-<form name='invoer' enctype="multipart/form-data"
- action="" method="post">
+<form name="invoer" enctype="multipart/form-data" action="" method="post">
<table border="0" cellpadding="0" cellspacing="0">
<tr valign="top">
<th width="100" style="text-align: left; padding-left : 70px">Options</th>
<td>
- <input type="radio" name="invoermethode" value='file' checked
- onClick="updateVisibility();">
+ <input type="radio" name="invoermethode" value="file" checked onClick="updateVisibility();">
The reference sequence file is a local file<br>
- <input type="radio" name="invoermethode" value='url'
- onClick="updateVisibility();">
+ <input type="radio" name="invoermethode" value="url" onClick="updateVisibility();">
The reference sequence file can be found at the following URL<br>
- <input type="radio" name="invoermethode" value='gene'
- onClick="updateVisibility();">
+ <input type="radio" name="invoermethode" value="gene" onClick="updateVisibility();">
Retrieve part of the reference genome for a (HGNC) gene symbol<br>
- <input type="radio" name="invoermethode" value='chr'
- onClick="updateVisibility();">
+ <input type="radio" name="invoermethode" value="chr" onClick="updateVisibility();">
Retrieve a range of a chromosome by accession number<br>
- <input type="radio" name="invoermethode" value='chrname'
- onClick="updateVisibility();">
+ <input type="radio" name="invoermethode" value="chrname" onClick="updateVisibility();">
Retrieve a range of a chromosome by name<br>
</td>
</tr>
@@ -52,13 +46,13 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
<td>
<span id="file_label">
<i>Please select the GenBank file in plain text format</i><br>
- <input type='file' name="bestandsveld"><br>
+ <input type="file" name="bestandsveld"><br>
</span>
<span id="url_label">
<i>Please enter the URL of the GenBank file in plain text
(including http://)</i>
<br>
- <input type='text' name="urlveld"><br>
+ <input type="text" name="urlveld"><br>
</span>
<span id="gene_label">
<i>Please enter the Gene symbol and organism name without spaces
@@ -71,18 +65,18 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
<table>
<tr>
<td>Gene symbol</td>
- <td><input type='text' name="genesymbol"></td>
+ <td><input type="text" name="genesymbol"></td>
</tr>
<tr>
<td>Organism name</td>
- <td><input type='text' name="organism"></td>
+ <td><input type="text" name="organism"></td>
</tr>
<tr>
<td>Number of 5' flanking nucleotides</td>
- <td><input type='text' name="fiveutr" value="5000"></td>
+ <td><input type="text" name="fiveutr" value="5000"></td>
</tr>
<tr><td>Number of 3' flanking nucleotides</td>
- <td><input type='text' name="threeutr" value="2000"></td>
+ <td><input type="text" name="threeutr" value="2000"></td>
</tr>
</table>
</span>
@@ -92,15 +86,15 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
<table>
<tr>
<td>Chromosome accession number</td>
- <td><input type='text' name="chracc"></td>
+ <td><input type="text" name="chracc"></td>
</tr>
<tr>
<td>Start position</td>
- <td><input type='text' name="start"></td>
+ <td><input type="text" name="start"></td>
</tr>
<tr>
<td>Stop position</td>
- <td><input type='text' name="stop"></td>
+ <td><input type="text" name="stop"></td>
</tr>
<tr>
<td>Orientation</td>
@@ -121,9 +115,7 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
<td>Assembly</td>
<td>
<select name="chrnameassembly">
- <option
- selected="selected"
- value="{{ selected_assembly|e }}">{{ selected_assembly|e }}</option>
+ <option selected="selected" value="{{ selected_assembly|e }}">{{ selected_assembly|e }}</option>
{% for i in unselected_assemblies %}
<option value="{{ i|e }}">{{ i|e }}</option>
{% endfor %}
@@ -132,15 +124,15 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
</tr>
<tr>
<td>Chromosome name</td>
- <td><input type='text' name="chrname"></td>
+ <td><input type="text" name="chrname"></td>
</tr>
<tr>
<td>Start position</td>
- <td><input type='text' name="chrnamestart"></td>
+ <td><input type="text" name="chrnamestart"></td>
</tr>
<tr>
<td>Stop position</td>
- <td><input type='text' name="chrnamestop"></td>
+ <td><input type="text" name="chrnamestop"></td>
</tr>
<tr>
<td>Orientation</td>
@@ -153,11 +145,10 @@ sequence (maximum size is {{ maxSize|e }} megabytes):
</tr>
</table>
</span>
- <input type='hidden' name="method" value="gbupload">
- <input type='hidden' name="client" value="human">
- <input type='hidden' name="location" value="file">
- <input type='hidden' name="bestandsnaam"
- value="">
+ <input type="hidden" name="method" value="gbupload">
+ <input type="hidden" name="client" value="human">
+ <input type="hidden" name="location" value="file">
+ <input type="hidden" name="bestandsnaam" value="">
</td>
</tr>
<tr height="20px"></tr>
diff --git a/mutalyzer/templates/snp_converter.html b/mutalyzer/templates/snp_converter.html
index ff3d64fc..b729715a 100644
--- a/mutalyzer/templates/snp_converter.html
+++ b/mutalyzer/templates/snp_converter.html
@@ -15,18 +15,10 @@
<p>
Example: rs9919552
</p>
- <form action = "" method = "post">
- <input
- type = "text"
- name = "rsId"
- style = "width:25%"
- ><br>
- <input
- type="submit"
- value="Submit"
- >
- <input type="button" value="Clear field"
- onclick="clearField(this.form, 'rsId');">
+ <form action="" method="post">
+ <input type="text" name="rsId" style="width:25%"><br>
+ <input type="submit" value="Submit">
+ <input type="button" value="Clear field" onclick="clearField(this.form, 'rsId');">
<a href="https://humgenprojects.lumc.nl/trac/mutalyzer/wiki/SnpConverter">Help</a>
</form>
</div>
diff --git a/mutalyzer/templates/syntax_checker.html b/mutalyzer/templates/syntax_checker.html
index 6ac53a6c..5e748c8c 100644
--- a/mutalyzer/templates/syntax_checker.html
+++ b/mutalyzer/templates/syntax_checker.html
@@ -17,17 +17,10 @@
</div><br>
Example: AB026906.1:c.274G>T<br>
<br>
- <form action = "" method = "post">
- <input
- type = "text"
- name = "variant"
- value = "{{ variant|e }}"
- style = "width:100%"><br>
- <input
- type="submit"
- value="Submit">
- <input type="button" value="Clear field"
- onclick="clearField(this.form, 'variant');">
+ <form action="" method="post">
+ <input type="text" name="variant" value="{{ variant|e }}" style="width:100%"><br>
+ <input type="submit" value="Submit">
+ <input type="button" value="Clear field" onclick="clearField(this.form, 'variant');">
<a href="https://humgenprojects.lumc.nl/trac/mutalyzer/wiki/SyntaxChecker">Help</a>
</form>
</div>
diff --git a/mutalyzer/templates/test.js b/mutalyzer/templates/test.js
deleted file mode 100644
index cef692f9..00000000
--- a/mutalyzer/templates/test.js
+++ /dev/null
@@ -1,2 +0,0 @@
-function yo() {
-}
--
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