Unverified Commit 95eaf693 authored by Mihai's avatar Mihai Committed by GitHub
Browse files

Add and update links. (#518)

* Update article link

* Add link to version 3

* Update dependencies

* Open external links in new tabs

* Mention dev in version
parent cd663e3d
......@@ -21,7 +21,7 @@ from __future__ import unicode_literals
# [1] http://peak.telecommunity.com/DevCenter/setuptools#specifying-your-project-s-version
# [2] http://semver.org/
__version_info__ = ('2', '0', '33')
__version_info__ = ('2', '0', '34' 'dev')
__date__ = '24 November 2020'
......
......@@ -98,13 +98,12 @@ Dunnen.
</p>
<p>
Since references to WWW-sites are not yet acknowledged as citations,
please mention
<a href="http://www.ncbi.nlm.nih.gov/pubmed/18000842">
&quot;Wildeman M et al. (2008). Improving sequence variant
descriptions in mutation databases and literature using the
Mutalyzer sequence variation nomenclature checker. Hum Mutat 29,
6-13&quot;</a> (<a href="http://dx.doi.org/10.1002/humu.20654">direct
Please mention
<a href="https://pubmed.ncbi.nlm.nih.gov/33538839/">
&quot;Lefter M et al. (2021). Mutalyzer 2: Next Generation HGVS
Nomenclature Checker. Bioinformatics, btab051&quot;</a>
(<a href="https://doi.org/10.1093/bioinformatics/btab051">direct
link</a>) when referring to these pages.
</p>
......
......@@ -93,11 +93,13 @@
<li class="dropdown {% if id == active_page %} active{% endif %}">
<a href="#" class="dropdown-toggle" data-toggle="dropdown">External links <span class="caret"></span></a>
<ul class="dropdown-menu">
<li class="menu{% if id == active_page %} active{% endif %}"><a href="http://www.genenames.org/guidelines.html">Human Gene Nomenclature</a></li>
<li class="menu{% if id == active_page %} active{% endif %}">
<a href="http://www.genenames.org/guidelines.html" target="_blank">Human Gene Nomenclature</a></li>
<li class="menu{% if id == active_page %} active{% endif
%}"><a href="https://varnomen.hgvs.org/">HGVS Sequence
%}"><a href="https://varnomen.hgvs.org/" target="_blank">HGVS Sequence
Variant Nomenclature</a></li>
<li class="menu{% if id == active_page %} active{% endif %}"><a href="http://www.lovd.nl/">LOVD</a></li>
<li class="menu{% if id == active_page %} active{% endif %}">
<a href="http://www.lovd.nl/" target="_blank">LOVD</a></li>
</ul>
</li>
......@@ -106,16 +108,16 @@
<ul class="dropdown-menu">
<li>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Documentation">Documentation</a>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Documentation" target="_blank">Documentation</a>
</li>
<li>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Mutalyzer-FAQ">FAQ</a>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Mutalyzer-FAQ" target="_blank">FAQ</a>
</li>
<li>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Mutalyzer-Exercise">Exercise</a>
<a href="https://github.com/mutalyzer/mutalyzer/wiki/Mutalyzer-Exercise" target="_blank">Exercise</a>
</li>
<li>
<a href="https://groups.google.com/forum/#!forum/mutalyzer">Mailing list</a>
<a href="https://groups.google.com/forum/#!forum/mutalyzer" target="_blank">Mailing list</a>
</li>
</ul>
</li>
......@@ -127,7 +129,7 @@
</ul>
<ul class="nav navbar-nav navbar-right">
<li>
<a class="navbar-brand" href="https://github.com/mutalyzer/mutalyzer"><img
<a class="navbar-brand" href="https://github.com/mutalyzer/mutalyzer" target="_blank"><img
src="{{ url_for('static', filename='images/github_logo.png') }}" title="Mutalyzer on GitHub"></a>
</li>
</ul>
......@@ -150,6 +152,16 @@
</div>
{% endif %}
<div id="new-version"
class="alert alert-info block"
style="background-color: #d9edf7; padding-top:20px; padding-bottom:20px;">
<p>
<strong>Check out the</strong>
<a href="https://v3.mutalyzer.nl/">Mutalyzer 3 Alpha</a>
<strong>release!</strong>
</p>
</div>
<!-- Main content -->
<div class="block block-shadow">
{% if page_title %}<h1>{{ page_title }}</h1>{% endif %}
......
-e git+https://github.com/mutalyzer/magic-python.git@centos6-fix#egg=Magic_file_extensions
Flask==1.1.1
Jinja2==2.10.1
Flask==1.1.2
Jinja2==2.11.3
MySQL-python==1.2.5
PyYAML==5.2
SQLAlchemy==1.3.11
PyYAML==5.4.1
SQLAlchemy==1.3.23
Sphinx==1.8.5
Werkzeug==0.16.0
alembic==1.3.1
Werkzeug==1.0.1
alembic==1.5.7
backtranslate==0.0.5
biopython==1.75
chardet==3.0.4
chardet==4.0.0
cssselect==1.1.0
-e git+https://github.com/mutalyzer/crossmapper-legacy.git#egg=crossmapper
description-extractor==2.3.5
interval-binning==1.0.0
lxml==4.4.2
lxml==4.6.2
mock==3.0.5
mockredispy==2.9.3
pyparsing==2.0.5
pytest==4.6.7
pytz==2019.3
redis==3.3.11
requests==2.22.0
simplejson==3.17.0
sphinx-rtd-theme==0.4.3
spyne==2.12.16
pytest==4.6.11
pytz==2021.1
redis==3.5.3
requests==2.25.1
simplejson==3.17.2
sphinx-rtd-theme==0.5.1
spyne==2.13.16
suds==0.4
wsgiref==0.1.2
xlrd==1.2.0
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