From 885be18fb2c20627aee5d938932a223b924d683d Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 21 Jun 2012 13:59:54 +0000
Subject: [PATCH] Check for unknown GI reference identifier
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@554 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
mutalyzer/Retriever.py | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/mutalyzer/Retriever.py b/mutalyzer/Retriever.py
index 99aedd97..613bd789 100644
--- a/mutalyzer/Retriever.py
+++ b/mutalyzer/Retriever.py
@@ -720,6 +720,10 @@ class GenBankRetriever(Retriever):
"""
if (identifier[0].isdigit()) : # This is a GI identifier.
name = self._database.getGBFromGI(identifier)
+ if name is None:
+ self._output.addMessage(__file__, 4, "ERETR",
+ "Unknown reference: %s" % identifier)
+ return
else :
name = identifier
--
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