From 823f5bc0496c940fc39c70493cd596ca9c139fea Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 29 Nov 2012 15:24:19 +0000
Subject: [PATCH] Rename some warning codes
Changed codes:
WCDSSELECTED -> WCDS
WCDS -> WCDS_OTHER
WSPLICESELECTED -> WSPLICE
WSPLICE -> WSPLICE_OTHER
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@644 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
mutalyzer/GenRecord.py | 4 ++--
mutalyzer/variantchecker.py | 4 ++--
2 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/mutalyzer/GenRecord.py b/mutalyzer/GenRecord.py
index d06547ab..f0431ca2 100644
--- a/mutalyzer/GenRecord.py
+++ b/mutalyzer/GenRecord.py
@@ -824,10 +824,10 @@ class GenRecord() :
# It should be easy for SOAP clients to filter out all warnings
# related to other transcripts, so we use two codes here.
if transcript.current:
- warning = 'WSPLICESELECTED'
+ warning = 'WSPLICE'
str_transcript = 'transcript %s (selected)' % transcript.name
else:
- warning = 'WSPLICE'
+ warning = 'WSPLICE_OTHER'
str_transcript = 'transcript %s' % transcript.name
if intronPos <= config.get('spliceAlarm'):
diff --git a/mutalyzer/variantchecker.py b/mutalyzer/variantchecker.py
index 1125eed0..562c4d1e 100644
--- a/mutalyzer/variantchecker.py
+++ b/mutalyzer/variantchecker.py
@@ -1691,12 +1691,12 @@ def check_variant(description, output):
else:
if transcript.current:
- output.addMessage(__file__, 2, "WCDSSELECTED", "CDS length is " \
+ output.addMessage(__file__, 2, "WCDS", "CDS length is " \
"not a multiple of three in gene %s, transcript " \
"variant %s (selected)." % (gene.name, transcript.name))
transcript.proteinDescription = 'p.?'
else:
- output.addMessage(__file__, 2, "WCDS", "CDS length is " \
+ output.addMessage(__file__, 2, "WCDS_OTHER", "CDS length is " \
"not a multiple of three in gene %s, transcript " \
"variant %s." % (gene.name, transcript.name))
transcript.proteinDescription = 'p.?'
--
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