From 741f4c9b133c0450f168f0471c5c0807fc16ee23 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Mon, 24 Nov 2014 15:10:48 +0100
Subject: [PATCH] Fix form labels
---
mutalyzer/website/templates/batch-jobs.html | 8 ++---
.../templates/description-extractor.html | 4 +--
mutalyzer/website/templates/name-checker.html | 2 +-
.../website/templates/name-generator.html | 36 +++++++++----------
.../website/templates/position-converter.html | 4 +--
.../website/templates/reference-loader.html | 32 ++++++++---------
.../website/templates/snp-converter.html | 2 +-
.../website/templates/syntax-checker.html | 2 +-
8 files changed, 45 insertions(+), 45 deletions(-)
diff --git a/mutalyzer/website/templates/batch-jobs.html b/mutalyzer/website/templates/batch-jobs.html
index 0c367a07..4b4db657 100644
--- a/mutalyzer/website/templates/batch-jobs.html
+++ b/mutalyzer/website/templates/batch-jobs.html
@@ -28,8 +28,8 @@
</div>
<div id="assembly_name_or_alias" style="display:none" class="form-group">
- <label>Assembly</label>
- <select name="assembly_name_or_alias" class="form-control">
+ <label for="assembly_name_or_alias">Assembly</label>
+ <select name="assembly_name_or_alias" id="assembly_name_or_alias" class="form-control">
{% for assembly in assemblies %}
<option value="{{ assembly.name }}"{% if assembly_name_or_alias in (assembly.name, assembly.alias) %} selected="selected"{% endif %}>{{ assembly.taxonomy_common_name }} — {{ assembly.name }}{% if assembly.alias %} ({{ assembly.alias }}){% endif %}</option>
{% endfor %}
@@ -38,12 +38,12 @@
<div class="form-group">
<label for="email">Email address</label>
- <input name="email" type="email" class="form-control" placeholder="Email address (notification will be sent here)" required value="{{ email }}">
+ <input name="email" id="email" type="email" class="form-control" placeholder="Email address (notification will be sent here)" required value="{{ email }}">
</div>
<div class="form-group">
<label for="file">File</label>
- <input type="file" name="file">
+ <input type="file" name="file" id="file">
</div>
</div>
diff --git a/mutalyzer/website/templates/description-extractor.html b/mutalyzer/website/templates/description-extractor.html
index 0028fa83..2f2cb17d 100644
--- a/mutalyzer/website/templates/description-extractor.html
+++ b/mutalyzer/website/templates/description-extractor.html
@@ -32,12 +32,12 @@ Please supply a reference sequence and an observed sequence.
<form action="{{ url_for('.description_extractor') }}" method="get" class="form">
<div class="form-group">
<label for="reference_sequence">Reference sequence</label>
- <input type="text" name="reference_sequence" value="{{ reference_sequence }}" class="form-control form-pre example-target" placeholder="Reference sequence">
+ <input type="text" name="reference_sequence" id="reference_sequence" value="{{ reference_sequence }}" class="form-control form-pre example-target" placeholder="Reference sequence">
<p>Example: <code class="example-input">ATGATGATCAGATACAGTGTGATACAGGTAGTTAGACAA</code></p>
</div>
<div class="form-group">
<label for="variant_sequence">Observed sequence</label>
- <input type="text" name="variant_sequence" value="{{ variant_sequence }}" class="form-control form-pre example-target-2" placeholder="Observed sequence">
+ <input type="text" name="variant_sequence" id="variant_sequence" value="{{ variant_sequence }}" class="form-control form-pre example-target-2" placeholder="Observed sequence">
<p>Example: <code class="example-input-2">ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA</code></p>
</div>
<div class="form-group">
diff --git a/mutalyzer/website/templates/name-checker.html b/mutalyzer/website/templates/name-checker.html
index 8eedc8ee..7744318a 100644
--- a/mutalyzer/website/templates/name-checker.html
+++ b/mutalyzer/website/templates/name-checker.html
@@ -52,7 +52,7 @@
<div class="form-group">
<label for="description">Variant description</label>
<input class="form-control form-pre example-target" type="text"
- name="description" id="hgvs" value="{{ description }}"
+ name="description" id="description" value="{{ description }}"
placeholder="Variant description using HGVS format">
<p>Example: <code class="example-input">AB026906.1:c.274G>T</code></p>
</div>
diff --git a/mutalyzer/website/templates/name-generator.html b/mutalyzer/website/templates/name-generator.html
index 3e948b6c..43be0026 100644
--- a/mutalyzer/website/templates/name-generator.html
+++ b/mutalyzer/website/templates/name-generator.html
@@ -16,16 +16,16 @@
<h4>Reference</h4>
<div class="form-group">
- <label for="refe" class="col-sm-2 control-label">Reference sequence</label>
+ <label for="control-refe" class="col-sm-2 control-label">Reference sequence</label>
<div class="col-sm-10">
- <input type="text" name="refe" value=""class="form-control" placeholder="Reference" >
+ <input type="text" name="refe" id="control-refe" value=""class="form-control" placeholder="Reference" >
</div>
</div>
<div class="form-group">
- <label for="seqT" class="col-sm-2 control-label">Sequence type</label>
+ <label for="control-seqT" class="col-sm-2 control-label">Sequence type</label>
<div class="col-sm-10">
- <select name="seqT" class="form-control">
+ <select name="seqT" id="control-seqT" class="form-control">
<option value="g">Genomic</option>
<option value="c" selected="1">Coding DNA</option>
<option value="n">NonCoding DNA</option>
@@ -50,16 +50,16 @@
</div>
<div id="gSym" class="form-group">
- <label for="gSym" class="col-sm-2 control-label">Gene symbol</label>
+ <label for="control-gSym" class="col-sm-2 control-label">Gene symbol</label>
<div class="col-sm-10">
- <input type="text" name="gSym" size="20" value=""class="form-control" placeholder="Gene symbol">
+ <input type="text" name="gSym" id="control-gSym" size="20" value=""class="form-control" placeholder="Gene symbol">
</div>
</div>
<div id="tVar" class="form-group">
- <label for="tVar" class="col-sm-2 control-label">Transcript</label>
+ <label for="control-tVar" class="col-sm-2 control-label">Transcript</label>
<div class="col-sm-10">
- <input type="text" name="tVar" size="20" value="" class="form-control" placeholder="Transcript">
+ <input type="text" name="tVar" id="control-tVar" size="20" value="" class="form-control" placeholder="Transcript">
</div>
</div>
@@ -85,8 +85,8 @@
<div id="varianttemplate" style="display: none">
<div class="row form-horizontal-inline">
<div class="form-group col-md-6" id="V{NMBR}mutTrow">
- <label for="V{NMBR}mutT" id="V{NMBR}mutTname">Variant type</label>
- <select name="V{NMBR}mutT" onchange="update();"class="form-control input-sm" >
+ <label for="control-V{NMBR}mutT" id="V{NMBR}mutTname">Variant type</label>
+ <select name="V{NMBR}mutT" id="control-V{NMBR}mutT" onchange="update();"class="form-control input-sm" >
<option value="1">Substitution</option>
<option value="2">Deletion</option>
<option value="3">Insertion</option>
@@ -98,30 +98,30 @@
</div>
<div class="form-group col-md-6" id="V{NMBR}P1row">
- <label id="V{NMBR}P1name">Start position</label>
- <input type="text" name="V{NMBR}P1" value="" class="form-control input-sm">
+ <label for="control-V{NMBR}P1name" id="V{NMBR}P1name">Start position</label>
+ <input type="text" name="V{NMBR}P1" id="control-V{NMBR}P1name" value="" class="form-control input-sm">
<div class="text-danger small" id="V{NMBR}P1error"></div>
</div>
<div class="form-group col-md-6" id="V{NMBR}P2row">
- <label id="V{NMBR}P2name">End position</label>
- <input type="text" name="V{NMBR}P2" size="20" value="" class="form-control input-sm" >
+ <label for="control-V{NMBR}P2name" id="V{NMBR}P2name">End position</label>
+ <input type="text" name="V{NMBR}P2" id="control-V{NMBR}P2name" size="20" value="" class="form-control input-sm" >
<div class="text-danger small" id="V{NMBR}P2error"></div>
</div>
</div>
<div class="row form-horizontal-inline">
<div class="col-md-6" id="V{NMBR}S1row">
<div class="form-group" name="S1">
- <label id="V{NMBR}S1name">Old sequence</label>
- <input type="text" name="V{NMBR}S1" size="20" value=""class="form-control input-sm">
+ <label for="control-V{NMBR}S1name" id="V{NMBR}S1name">Old sequence</label>
+ <input type="text" name="V{NMBR}S1" id="control-V{NMBR}S1name" size="20" value=""class="form-control input-sm">
<div class="text-danger small" id="V{NMBR}S1error"></div>
</div>
</div>
<div class="col-md-6" id="V{NMBR}S2row">
<div class="form-group" name="S2">
- <label id="V{NMBR}S2name">New sequence</label>
- <input type="text" name="V{NMBR}S2" size="20" value=""class="form-control input-sm">
+ <label for="control-V{NMBR}S2name" id="V{NMBR}S2name">New sequence</label>
+ <input type="text" name="V{NMBR}S2" id="control-V{NMBR}S2name" size="20" value=""class="form-control input-sm">
<div class="text-danger small" id="V{NMBR}S2error"></div>
</div>
</div>
diff --git a/mutalyzer/website/templates/position-converter.html b/mutalyzer/website/templates/position-converter.html
index 54b3b580..d168befe 100644
--- a/mutalyzer/website/templates/position-converter.html
+++ b/mutalyzer/website/templates/position-converter.html
@@ -19,7 +19,7 @@ normalize it to HGVS. Use the <a href="{{ url_for('.name_checker') }}">Name Chec
<form class="form" role="form" action="{{ url_for('.position_converter') }}" method="get" enctype="multipart/form-data">
<div class="form-group">
<label for="assembly_name_or_alias">Build</label>
- <select name="assembly_name_or_alias" class="form-control">
+ <select name="assembly_name_or_alias" id="assembly_name_or_alias" class="form-control">
{% for assembly in assemblies %}
<option value="{{ assembly.name }}"{% if assembly_name_or_alias in (assembly.name, assembly.alias) %} selected="selected"{% endif %}>{{ assembly.taxonomy_common_name }} — {{ assembly.name }}{% if assembly.alias %} ({{ assembly.alias }}){% endif %}</option>
{% endfor %}
@@ -27,7 +27,7 @@ normalize it to HGVS. Use the <a href="{{ url_for('.name_checker') }}">Name Chec
</div>
<div class="form-group">
<label for="description">Variant description</label>
- <input type="text" name="description" value="{{ description }}"
+ <input type="text" name="description" id="description" value="{{ description }}"
class="form-control form-pre example-target" placeholder="Variant description using HGVS format">
<p>Examples: <code class="example-input">NM_003002.3:c.274G>T</code>, <code class="example-input">chr11:g.111959693G>T</code> and <code class="example-input">NC_000011.9:g.111959693G>T</code></p>
</div>
diff --git a/mutalyzer/website/templates/reference-loader.html b/mutalyzer/website/templates/reference-loader.html
index 1accdadd..0e8b5617 100644
--- a/mutalyzer/website/templates/reference-loader.html
+++ b/mutalyzer/website/templates/reference-loader.html
@@ -66,13 +66,13 @@ sequence (maximum size is {{ max_file_size }} megabytes).
<div class="col-md-6">
<div class="form-group" id="upload_label">
<label for="file">GenBank file</label>
- <input type="file" name="file">
+ <input type="file" name="file" id="file">
<p class="help-block">Please select the GenBank file in plain text format.</p>
</div>
<div class="form-group" id="url_label">
<label for="url">GenBank file URL</label>
- <input type="text" name="url" class="form-control">
+ <input type="text" name="url" id="url" class="form-control">
<p class="help-block">Please enter the URL of the GenBank file in plain text (including http://).</p>
</div>
@@ -85,35 +85,35 @@ sequence (maximum size is {{ max_file_size }} megabytes).
Entrez</a> search engine and is therefore based on the current
Entrez assembly for the given organism (GRCh38/hg38 for human).</p>
<label for="genesymbol">Gene symbol</label>
- <input type="text" name="genesymbol" class="form-control">
+ <input type="text" name="genesymbol" id="genesymbol" class="form-control">
</div>
<div class="form-group">
<label for="organism">Organism name</label>
- <input type="text" name="organism" class="form-control">
+ <input type="text" name="organism" id="organism" class="form-control">
</div>
<div class="form-group">
<label for="upstream">Number of 5' flanking nucleotides</label>
- <input type="text" name="upstream" value="5000" class="form-control">
+ <input type="text" name="upstream" id="upstream" value="5000" class="form-control">
</div>
<div class="form-group">
<label for="downstream"><td>Number of 3' flanking nucleotides</label>
- <input type="text" name="downstream" value="2000" class="form-control">
+ <input type="text" name="downstream" id="downstream" value="2000" class="form-control">
</div>
</div>
<div id="slice_accession_label">
<div class="form-group">
<p class="help-block">Please enter the accession number of the chromosome or contig and specify the range.</p>
- <label>Chromosome accession number</label>
- <input type="text" name="accession" class="form-control">
+ <label for="accession">Chromosome accession number</label>
+ <input type="text" name="accession" id="accession" class="form-control">
</div>
<div class="form-group">
- <label>Start position</label>
- <input type="text" name="accession_start" class="form-control">
+ <label for="accession_start">Start position</label>
+ <input type="text" name="accession_start" id="accession_start" class="form-control">
</div>
<div class="form-group">
- <label>Stop position</label>
- <input type="text" name="accession_stop" class="form-control">
+ <label for="accession_stop">Stop position</label>
+ <input type="text" name="accession_stop" id="accession_stop" class="form-control">
</div>
<div class="form-group">
<label>Orientation</label>
@@ -126,7 +126,7 @@ sequence (maximum size is {{ max_file_size }} megabytes).
<div class="form-group">
<p class="help-block">Please enter the name of the chromosome and specify the range.</p>
<label for="assembly_name_or_alias">Assembly</label>
- <select name="assembly_name_or_alias" class="form-control">
+ <select name="assembly_name_or_alias" id="assembly_name_or_alias" class="form-control">
{% for assembly in assemblies %}
<option value="{{ assembly.name }}"{% if assembly_name_or_alias in (assembly.name, assembly.alias) %} selected="selected"{% endif %}>{{ assembly.taxonomy_common_name }} — {{ assembly.name }}{% if assembly.alias %} ({{assembly.alias }}){% endif %}</option>
{% endfor %}
@@ -134,15 +134,15 @@ sequence (maximum size is {{ max_file_size }} megabytes).
</div>
<div class="form-group">
<label for="chromosome">Chromosome name</label>
- <input type="text" name="chromosome" class="form-control">
+ <input type="text" name="chromosome" id="chromosome" class="form-control">
</div>
<div class="form-group">
<label for="chromosome_start">Start position</label>
- <input type="text" name="chromosome_start" class="form-control">
+ <input type="text" name="chromosome_start" id="chromosome_start" class="form-control">
</div>
<div class="form-group">
<label for="chromosome_stop">Stop position</label>
- <input type="text" name="chromosome_stop" class="form-control">
+ <input type="text" name="chromosome_stop" id="chromosome_stop" class="form-control">
</div>
<div class="form-group">
<label for="chromosome_orientation">Orientation</label>
diff --git a/mutalyzer/website/templates/snp-converter.html b/mutalyzer/website/templates/snp-converter.html
index 493dcc6b..ec2dcc23 100644
--- a/mutalyzer/website/templates/snp-converter.html
+++ b/mutalyzer/website/templates/snp-converter.html
@@ -16,7 +16,7 @@ the reference sequence(s) used by dbSNP.
<div class="form-group">
<label for="description">SNP</label>
<input type="text" class="form-control form-pre example-target"
- name="rs_id" placeholder="dbSNP rs number (including rs)" value="{{ rs_id }}" ></input>
+ name="rs_id" id="description" placeholder="dbSNP rs number (including rs)" value="{{ rs_id }}" ></input>
<p>Example: <code class="example-input">rs9919552</code></p>
</div>
diff --git a/mutalyzer/website/templates/syntax-checker.html b/mutalyzer/website/templates/syntax-checker.html
index 5c7506de..de4b800a 100644
--- a/mutalyzer/website/templates/syntax-checker.html
+++ b/mutalyzer/website/templates/syntax-checker.html
@@ -18,7 +18,7 @@ standard variant nomenclature">HGVS</a> format:
<div class="form-group">
<label for="description">Variant description</label>
<input class="form-control form-pre example-target" type="text"
- name="description" value="{{ description }}" placeholder="Variant description using HGVS format">
+ name="description" id="description" value="{{ description }}" placeholder="Variant description using HGVS format">
<p>Example: <code class="example-input">AB026906.1:c.274G>T</code></p>
</div>
<div class="form-group button-group">
--
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