From 6c6241e6e0fee93d32eefd12f26f1a92ac700c4f Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 17 Mar 2016 11:42:20 +0100
Subject: [PATCH] Add docs for LRG transcripts mapping import

---
 doc/admin.rst | 14 ++++++++++++++
 1 file changed, 14 insertions(+)

diff --git a/doc/admin.rst b/doc/admin.rst
index 0dad3f04..ac3a86f7 100644
--- a/doc/admin.rst
+++ b/doc/admin.rst
@@ -73,6 +73,20 @@ Examples for other assemblies can be found in `this Gist
 <https://gist.github.com/martijnvermaat/ce84945d05b4e42d3584>`_.
 
 
+Import mappings from an EBI LRG transcripts map file
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The EBI provides `FTP downloads <ftp://ftp.ebi.ac.uk/pub/databases/lrgex/>`_
+of transcript mappings for all of the LRG sequences on the latest human genome
+assembly. These can be imported with ``mutalyzer-admin``.
+
+For example, to import LRG transcript mappings for the GRCh37 assembly, run
+the following::
+
+    $ wget ftp://ftp.ebi.ac.uk/pub/databases/lrgex/list_LRGs_transcripts_GRCh37.txt -O /tmp/hg19.lrgmap.txt
+    $ mutalyzer-admin assemblies import-lrgmap -a hg19 /tmp/hg19.lrgmap.txt
+
+
 Import mappings from the UCSC Genome Browser MySQL database
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-- 
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