From 57f3a404421418127d84f16a4726de067a3ae9c7 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Tue, 23 Aug 2011 07:39:16 +0000
Subject: [PATCH] Documentation update.
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/branches/refactor-mutalyzer-branch@337 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
INSTALL | 4 ----
README | 29 ++++++++++++++++++++++++-----
2 files changed, 24 insertions(+), 9 deletions(-)
diff --git a/INSTALL b/INSTALL
index 3b799b4a..72856076 100644
--- a/INSTALL
+++ b/INSTALL
@@ -132,10 +132,6 @@ Now run the tests:
MUTALYZER_ENV=test nosetests
-Note: Currently it is not advised to run the tests on a production server
-since they need write access to the main Mutalyzer cache and log. A separate
-cache and log for local users and tests is planned functionality.
-
Upgrade Mutalyzer
-----------------
diff --git a/README b/README
index 5120e879..00f3e6d4 100644
--- a/README
+++ b/README
@@ -19,7 +19,8 @@ See the INSTALL file for installation instructions.
Unit tests
----------
-The unit tests depend on a running batch daemon and SOAP webservice:
+The unit tests depend on a running batch daemon, webserver, and SOAP
+webservice:
sudo /etc/init.d/mutalyzer-batchd start
sudo /etc/init.d/apache2 start
@@ -32,10 +33,6 @@ Or, if you are in a hurry, skip the long-running tests with:
MUTALYZER_ENV=test MUTALYZER_QUICK_TEST=1 nosetests -v
-Note: Currently it is not advised to run the tests on a production server
-since they need write access to the main Mutalyzer cache and log. A separate
-cache and log for local users and tests is planned functionality.
-
Development notes
-----------------
@@ -130,3 +127,25 @@ Automatic remote deployment depends on Fabric:
The unit tests depend on the following packages:
- python-nose >= 0.11
- python-webtest >= 1.2.3
+
+As of 2011-08-23, snakefood reports the following imports from the Mutalyzer
+source code (excluding the standard library imports):
+
+ Bio
+ MySQLdb
+ SOAPpy
+ configobj
+ daemon
+ fabric
+ lockfile
+ lxml
+ magic
+ nose
+ pyparsing
+ setuptools
+ simpletal
+ soaplib
+ suds
+ web
+ webtest
+ xlrd
--
GitLab