diff --git a/mutalyzer/describe.py b/mutalyzer/describe.py index 555894661475b0ed114568f06dbf4d72b50e6c90..c76ff4c4811ba3a2a9f4c92abd0dcc8766721b88 100644 --- a/mutalyzer/describe.py +++ b/mutalyzer/describe.py @@ -624,6 +624,8 @@ def describe_dna(s1, s2): #if #for + if not description: + return Allele([DNAVar()]) return description #describe_dna diff --git a/tests/test_describe.py b/tests/test_describe.py index f1ccb6180a6c62aedb9a3b63dc7444febbf953a3..080f3716d35955df13c659cdd77b5e3ca93b0bc2 100644 --- a/tests/test_describe.py +++ b/tests/test_describe.py @@ -25,7 +25,7 @@ class TestDescribe(MutalyzerTest): """ reference = "ACGTCGATTCGCTAGCTTCGGGGGATAGATAGAGATATAGAGAT" - result = describe.describe(reference, sample) + result = describe.describe_dna(reference, sample) assert result[0].type == expected[0] assert result[0].start == expected[1] assert result[0].end == expected[2] @@ -39,41 +39,37 @@ class TestDescribe(MutalyzerTest): """ Test 1. """ - result = describe.describe( + result = describe.describe_dna( 'ATGATGATCAGATACAGTGTGATACAGGTAGTTAGACAA', 'ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA') - description = describe.allele_description(result) - assert description == '[5_6insTT;17del;26A>C;35dup]' + assert unicode(result) == '[5_6insTT;17del;26A>C;35dup]' def test2(self): """ Test 2. """ - result = describe.describe( + result = describe.describe_dna( 'TAAGCACCAGGAGTCCATGAAGAAGATGGCTCCTGCCATGGAATCCCCTACTCTACTGTG', 'TAAGCACCAGGAGTCCATGAAGAAGCTGGATCCTCCCATGGAATCCCCTACTCTACTGTG') - description = describe.allele_description(result) - assert description == '[26A>C;30C>A;35G>C]' + assert unicode(result) == '[26A>C;30C>A;35G>C]' def test3(self): """ Test 3. """ - result = describe.describe( + result = describe.describe_dna( 'TAAGCACCAGGAGTCCATGAAGAAGATGGCTCCTGCCATGGAATCCCCTACTCTA', 'TAAGCACCAGGAGTCCATGAAGAAGCCATGTCCTGCCATGGAATCCCCTACTCTA') - description = describe.allele_description(result) - assert description == '[26_29inv;30C>G]' + assert unicode(result) == '[26_29inv;30C>G]' def test4(self): """ Test 4. """ - result = describe.describe( + result = describe.describe_dna( 'TAAGCACCAGGAGTCCATGAAGAAGATGGCTCCTGCCATGGAATCCCCTACTCTA', 'TAAGCACCAGGAGTCCATGAAGAAGCCATGTCCTGCCATGAATCCCCTACTCTA') - description = describe.allele_description(result) - assert description == '[26_29inv;30C>G;41del]' + assert unicode(result) == '[26_29inv;30C>G;41del]' def test5(self): """