diff --git a/tests/data/UD_139015194859.gb.bz2 b/tests/data/UD_139015194859.gb.bz2 deleted file mode 100644 index 74a412ed679809021b903d4c31bc2df8d34a0050..0000000000000000000000000000000000000000 Binary files a/tests/data/UD_139015194859.gb.bz2 and /dev/null differ diff --git a/tests/data/UD_139262478721.gb.bz2 b/tests/data/UD_139262478721.gb.bz2 new file mode 100644 index 0000000000000000000000000000000000000000..44e0f0ec87600206ac6482722cc88a03dac6f7f8 Binary files /dev/null and b/tests/data/UD_139262478721.gb.bz2 differ diff --git a/tests/fixtures.py b/tests/fixtures.py index 71b1ae1bfc7bba9bc17a56f8c1431f56b2eddde7..c867dd9774cf59b7d4ed51904471fbbc9224d451 100644 --- a/tests/fixtures.py +++ b/tests/fixtures.py @@ -87,14 +87,23 @@ REFERENCES = { 'geninfo_id': '192448441'}, 'LRG_1': {'filename': 'LRG_1.xml.bz2', 'checksum': '5b8f5a39fcd9e3005688eddffd482746'}, - 'DMD': {'accession': 'UD_139015194859', - 'filename': 'UD_139015194859.gb.bz2', - 'checksum': '2cc769c3f636c722142c0aae12662bd4', - 'links': [('NM_000109', 'NP_000100'), + 'DMD': {'accession': 'UD_139262478721', + 'filename': 'UD_139262478721.gb.bz2', + 'checksum': 'd41d8cd98f00b204e9800998ecf8427e', + 'links': [('XM_006724469', 'XP_006724532'), + ('XM_006724472', 'XP_006724535'), + ('XM_006724473', 'XP_006724536'), + ('XM_006724474', 'XP_006724537'), + ('XM_006724475', 'XP_006724538'), + ('XM_006724471', 'XP_006724534'), + ('XM_006724470', 'XP_006724533'), + ('XR_430491', None), + ('XM_006724468', 'XP_006724531'), + ('XM_006724476', 'XP_006724539'), + ('NM_000109', 'NP_000100'), ('NM_004006', 'NP_003997'), ('NM_004009', 'NP_004000'), ('NM_004010', 'NP_004001'), - ('NM_004007', None), ('NM_004011', 'NP_004002'), ('NM_004012', 'NP_004003'), ('NM_004023', 'NP_004014'), diff --git a/tests/test_variantchecker.py b/tests/test_variantchecker.py index 8c19421a9f0b8c891908b316d162a007b3d2733b..5a859b4f695f8ec1a8554fa7447ad16c051bb486 100644 --- a/tests/test_variantchecker.py +++ b/tests/test_variantchecker.py @@ -1062,7 +1062,7 @@ class TestVariantchecker(MutalyzerTest): check_variant(ud + ':g.5T>T', self.output) error_count, _, _ = self.output.Summary() assert error_count == 0 - assert self.output.getIndexedOutput('genomicChromDescription', 0) == 'NC_000023.10:g.=' + assert self.output.getIndexedOutput('genomicChromDescription', 0) == 'NC_000023.11:g.=' assert self.output.getIndexedOutput('genomicDescription', 0) == ud + ':g.=' assert ud + '(DMD_v001):c.=' \ in self.output.getOutput('descriptions')