diff --git a/tests/test_services_soap.py b/tests/test_services_soap.py index 69014c8c948feefec60db19149a27b1b3ee69df9..02a1bcf123b219485570f763569a593351c1ad28 100644 --- a/tests/test_services_soap.py +++ b/tests/test_services_soap.py @@ -328,8 +328,8 @@ class TestServicesSoap(): """ r = self.client.service.getdbSNPDescriptions('rs9919552') assert 'NC_000011.9:g.111959625C>T' in r.string - assert 'NG_012337.1:g.7055C>T' in r.string - assert 'NM_003002.2:c.204C>T' in r.string + assert 'NG_012337.2:g.7055C>T' in r.string + assert 'NM_003002.3:c.204C>T' in r.string assert 'NP_002993.1:p.Ser68=' in r.string def test_gettranscripts(self): @@ -496,8 +496,8 @@ class TestServicesSoap(): Running getTranscriptsAndInfo on a chromosomal slice should include chromosomal positions. - slice: 48284000 - 48259456 (COL1A1 with 5001 and 2001 borders) - translation start: 48284000 - 5001 + 1 = 48279000 + slice: 48284003 - 48259456 (COL1A1 with 5001 and 2001 borders) + translation start: 48284003 - 5001 + 1 = 48279003 translation end: 48259456 + 2001 = 48261457 """ ud = str(self.client.service.sliceChromosomeByGene('COL1A1', 'human', 5000, 2000)) @@ -508,18 +508,18 @@ class TestServicesSoap(): for t in r.TranscriptInfo: if t.name != 'COL1A1_v001': continue - assert_equal(t.cTransStart, '-126') + assert_equal(t.cTransStart, '-129') assert_equal(t.gTransStart, 5001) - assert_equal(t.chromTransStart, 48279000) + assert_equal(t.chromTransStart, 48279003) assert_equal(t.cTransEnd, '*1406') - assert_equal(t.gTransEnd, 22544) + assert_equal(t.gTransEnd, 22547) assert_equal(t.chromTransEnd, 48261457) - assert_equal(t.sortableTransEnd, 5801) + assert_equal(t.sortableTransEnd, 4883) assert_equal(t.cCDSStart, '1') - assert_equal(t.gCDSStart, 5127) + assert_equal(t.gCDSStart, 5130) assert_equal(t.chromCDSStart, 48278874) - assert_equal(t.cCDSStop, '4395') - assert_equal(t.gCDSStop, 21138) + assert_equal(t.cCDSStop, '3477') + assert_equal(t.gCDSStop, 21141) assert_equal(t.chromCDSStop, 48262863) @slow diff --git a/tests/test_website.py b/tests/test_website.py index b2a87d4f01ffa70f982900928d9a3217bc9a9f4e..4b323f9e1e332e4357ff57434fe9bdf5cb778c50 100644 --- a/tests/test_website.py +++ b/tests/test_website.py @@ -321,8 +321,8 @@ class TestWSGI(): r.mustcontain('0 Errors', '0 Warnings', 'NC_000011.9:g.111959625C>T', - 'NG_012337.1:g.7055C>T', - 'NM_003002.2:c.204C>T', + 'NG_012337.2:g.7055C>T', + 'NM_003002.3:c.204C>T', 'NP_002993.1:p.Ser68=') def test_snp_converter_invalid(self):