From 455ae1e2499fc05b2f6da4f8f830b25c8e58d25a Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 15 Nov 2012 09:07:33 +0000
Subject: [PATCH] Some unit tests for mtDNA position converter
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@639 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
tests/test_mapping.py | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/tests/test_mapping.py b/tests/test_mapping.py
index 084cd96e..8a9390bf 100644
--- a/tests/test_mapping.py
+++ b/tests/test_mapping.py
@@ -211,3 +211,28 @@ class TestConverter():
converter = self._converter('hg19')
coding = converter.chrom2c('NC_000011.9:g.111959695delGinsTAAA', 'list')
assert 'NM_003002.2:c.274delinsTAAA' in coding
+
+ def test_chrm_chrom2c(self):
+ """
+ Mitochondrial m. to c.
+ """
+ converter = self._converter('hg19')
+ coding = converter.chrom2c('NC_012920.1:m.12030del', 'list')
+ assert 'NC_012920.1(ND4_v001):c.1271del' in coding
+
+ def test_chrm_name_chrom2c(self):
+ """
+ Mitochondrial m. (by chromosome name) to c.
+ """
+ converter = self._converter('hg19')
+ variant = converter.correctChrVariant('chrM:m.12030del')
+ coding = converter.chrom2c(variant, 'list')
+ assert 'NC_012920.1(ND4_v001):c.1271del' in coding
+
+ def test_chrm_c2chrom(self):
+ """
+ Mitochondrial c. to m.
+ """
+ converter = self._converter('hg19')
+ genomic = converter.c2chrom('NC_012920.1(ND4_v001):c.1271del')
+ assert_equal(genomic, 'NC_012920.1:m.12030del')
--
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