From 38b8eff4900e9bb7336fb2ede99dc26f98f45f00 Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Sun, 27 Sep 2015 18:12:40 +0200
Subject: [PATCH] Fix bug in transcript-protein link query
---
mutalyzer/db/queries.py | 18 +++++++-----------
1 file changed, 7 insertions(+), 11 deletions(-)
diff --git a/mutalyzer/db/queries.py b/mutalyzer/db/queries.py
index ab4e814e..d457b60c 100644
--- a/mutalyzer/db/queries.py
+++ b/mutalyzer/db/queries.py
@@ -87,17 +87,13 @@ def get_transcript_protein_link(accession, reverse=False):
# Lookup by protein accession instead of transcript accession.
query_column, other_column = other_column, query_column
- return TranscriptProteinLink.query \
- .filter_by(transcript_accession=accession) \
- .filter(
- query_column == accession,
- or_(
- and_(other_column.isnot(None),
- TranscriptProteinLink.added >= link_datetime),
- and_(other_column.is_(None),
- TranscriptProteinLink.added >= negative_link_datetime))
- ) \
- .first()
+ return TranscriptProteinLink.query.filter(
+ query_column == accession,
+ or_(and_(other_column.isnot(None),
+ TranscriptProteinLink.added >= link_datetime),
+ and_(other_column.is_(None),
+ TranscriptProteinLink.added >= negative_link_datetime))
+ ).first()
def update_transcript_protein_link(transcript_accession=None,
--
GitLab