From 2cc108a83d47a0fe1d75b6b72fda32e4e9f2795a Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Tue, 13 May 2014 17:45:06 +0200
Subject: [PATCH] Add GRCh38 (hg38) assembly
---
extras/assemblies/GRCh38.json | 133 ++++++++++++++++++++++++++++++++++
1 file changed, 133 insertions(+)
create mode 100644 extras/assemblies/GRCh38.json
diff --git a/extras/assemblies/GRCh38.json b/extras/assemblies/GRCh38.json
new file mode 100644
index 00000000..7e5b1a03
--- /dev/null
+++ b/extras/assemblies/GRCh38.json
@@ -0,0 +1,133 @@
+{
+ "name": "GRCh38",
+ "alias": "hg38",
+ "taxonomy_id": 9606,
+ "taxonomy_common_name": "Homo sapiens",
+ "chromosomes": [
+ {
+ "organelle": "nucleus",
+ "name": "chr1",
+ "accession": "NC_000001.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr2",
+ "accession": "NC_000002.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr3",
+ "accession": "NC_000003.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr4",
+ "accession": "NC_000004.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr5",
+ "accession": "NC_000005.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr6",
+ "accession": "NC_000006.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr7",
+ "accession": "NC_000007.14"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr8",
+ "accession": "NC_000008.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr9",
+ "accession": "NC_000009.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr10",
+ "accession": "NC_000010.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr11",
+ "accession": "NC_000011.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr12",
+ "accession": "NC_000012.12"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr13",
+ "accession": "NC_000013.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr14",
+ "accession": "NC_000014.9"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr15",
+ "accession": "NC_000015.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr16",
+ "accession": "NC_000016.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr17",
+ "accession": "NC_000017.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr18",
+ "accession": "NC_000018.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr19",
+ "accession": "NC_000019.10"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr20",
+ "accession": "NC_000020.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr21",
+ "accession": "NC_000021.9"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chr22",
+ "accession": "NC_000022.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chrX",
+ "accession": "NC_000023.11"
+ },
+ {
+ "organelle": "nucleus",
+ "name": "chrY",
+ "accession": "NC_000024.10"
+ },
+ {
+ "organelle": "mitochondrion",
+ "name": "chrM",
+ "accession": "NC_012920.1"
+ }
+ ]
+}
--
GitLab