From 20cbda9ebf0e5f17bac45981fc815ceb66036f9c Mon Sep 17 00:00:00 2001
From: Martijn Vermaat <martijn@vermaat.name>
Date: Thu, 10 Nov 2011 14:13:53 +0000
Subject: [PATCH] Fix bugs due to implicit config refactoring
git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@416 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1
---
mutalyzer/Scheduler.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/mutalyzer/Scheduler.py b/mutalyzer/Scheduler.py
index ca30875f..e02744fc 100644
--- a/mutalyzer/Scheduler.py
+++ b/mutalyzer/Scheduler.py
@@ -365,7 +365,7 @@ Mutalyzer batch checker.""" % url)
if not skip :
#Run mutalyzer and get values from Output Object 'O'
try :
- variantchecker.check_variant(cmd, C, O)
+ variantchecker.check_variant(cmd, O)
except Exception:
#Catch all exceptions related to the processing of cmd
O.addMessage(__file__, 4, "EBATCHU",
@@ -499,7 +499,7 @@ Mutalyzer batch checker.""" % url)
if not skip :
try :
#process
- converter = Converter(build, C, O)
+ converter = Converter(build, O)
#Also accept chr accNo
variant = converter.correctChrVariant(variant)
--
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