diff --git a/mutalyzer/mapping.py b/mutalyzer/mapping.py index a9ba1b60df59f31e647c7ed43d254b716a18f5dc..c9025f93a163bcb2447bfbcbc6f55c1248c3a78d 100644 --- a/mutalyzer/mapping.py +++ b/mutalyzer/mapping.py @@ -166,8 +166,8 @@ class Converter(object) : versions = self.__database.get_NM_version(acc) if not versions : self.__output.addMessage(__file__, 4, "EACCNOTINDB", - "The accession number: %s could not be " - "found in our database." % acc) + "The accession number %s could not be " + "found in our database (or is not a transcript)." % acc) self.__output.addOutput("LOVDERR", "Reference sequence not found.") return None #Explicit return of None in case of error @@ -182,8 +182,8 @@ class Converter(object) : "Version number missing for %s" % acc) else : self.__output.addMessage(__file__, 4, "EACCNOTINDB", - "The accession number: %s version %s " - "could not be found in our database." % + "The accession number %s version %s " + "could not be found in our database (or is not a transcript)." % (acc, version)) self.__output.addMessage(__file__, 2, "WDIFFFOUND", "We found these versions: %s" % @@ -510,7 +510,7 @@ class Converter(object) : chrom = self.__database.chromAcc(preco) if chrom is None : self.__output.addMessage(__file__, 4, "ENOTINDB", - "Chromosome %s could not be found in our database" % + "The accession number %s could not be found in our database (or is not a chromosome)." % preco) return None #if @@ -542,7 +542,7 @@ class Converter(object) : chrom = self.__database.chromName("%s.%s" % (acc, version)) if not chrom : self.__output.addMessage(__file__, 4, "ENOTINDB", - "Accession number: %s could not be found in our database" % + "The Accession number %s could not be found in our database (or is not a chromosome)." % acc) return None #if