diff --git a/mutalyzer/services/rpc.py b/mutalyzer/services/rpc.py index fe79c8d10a9233940d3ace27c5dc05654f2db875..e70b238df41f4d93456a5ae8369e03df1a5dceff 100644 --- a/mutalyzer/services/rpc.py +++ b/mutalyzer/services/rpc.py @@ -1351,11 +1351,12 @@ class MutalyzerService(ServiceBase): session.query(func.min(TranscriptMapping.start), func.max(TranscriptMapping.stop), TranscriptMapping.orientation, - Chromosome) \ + Chromosome.name, + Chromosome.accession) \ .filter(TranscriptMapping.chromosome.has(assembly=assembly), TranscriptMapping.gene == gene) \ .join(TranscriptMapping.chromosome) \ - .group_by(TranscriptMapping.chromosome, + .group_by(Chromosome.id, TranscriptMapping.orientation) \ .first() @@ -1364,15 +1365,16 @@ class MutalyzerService(ServiceBase): raise Fault("EARG", "No location was found for gene %s." % gene) - start, stop, orientation, chromosome = mapping + start, stop, orientation, chromosome_name, chromosome_accession \ + = mapping result = GeneLocation() result.gene = gene result.start = start result.stop = stop result.orientation = orientation - result.chromosome_name = chromosome.name - result.chromosome_accession = chromosome.accession + result.chromosome_name = chromosome_name + result.chromosome_accession = chromosome_accession result.assembly_name = assembly.name result.assembly_alias = assembly.alias