From 033919778fde0943d18baa3079c451e4a27118cf Mon Sep 17 00:00:00 2001 From: Martijn Vermaat <martijn@vermaat.name> Date: Mon, 5 Nov 2012 07:51:40 +0000 Subject: [PATCH] Have latest refseq mapping in cron example git-svn-id: https://humgenprojects.lumc.nl/svn/mutalyzer/trunk@629 eb6bd6ab-9ccd-42b9-aceb-e2899b4a52f1 --- extras/cron.d/mutalyzer-mapping-update | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/extras/cron.d/mutalyzer-mapping-update b/extras/cron.d/mutalyzer-mapping-update index 496571df..505ce23d 100644 --- a/extras/cron.d/mutalyzer-mapping-update +++ b/extras/cron.d/mutalyzer-mapping-update @@ -1,5 +1,5 @@ # Update the mapping database every sunday morning at 03:25 and 04:25 #25 3 * * 7 www-data wget "ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.36.3/mapview/seq_gene.md.gz" -O - | zcat > /tmp/seq_gene.md; <MUTALYZER_BIN_MAPPING_UPDATE> hg18 /tmp/seq_gene.md reference -#25 4 * * 7 www-data wget "ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.37.2/mapview/seq_gene.md.gz" -O - | zcat > /tmp/seq_gene.md; <MUTALYZER_BIN_MAPPING_UPDATE> hg19 /tmp/seq_gene.md 'GRCh37.p2-Primary Assembly' +#25 4 * * 7 www-data wget "ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/ARCHIVE/BUILD.37.3/mapview/seq_gene.md.gz" -O - | zcat > /tmp/seq_gene.md; <MUTALYZER_BIN_MAPPING_UPDATE> hg19 /tmp/seq_gene.md 'GRCh37.p5-Primary Assembly' ##25 4 * * 7 www-data wget "ftp://ftp.ncbi.nih.gov/genomes/H_sapiens/mapview/seq_gene.md.gz" -O - | zcat > /tmp/seq_gene.md; <MUTALYZER_BIN_MAPPING_UPDATE> hg19 /tmp/seq_gene.md 'GRCh37.p5-Primary Assembly' -- GitLab