{% extends "base.html" %} {% set active_page = "reference-loader" %} {% set page_title = "Reference File Loader" %} {% block content %}

The Reference File Loader allows you to use your own reference sequence when no appropriate RefSeq, GenBank or LRG file is available.

Please select one of the options below to upload or retrieve your reference sequence (maximum size is {{ max_file_size }} megabytes):

Options The reference sequence file is a local file
The reference sequence file can be found at the following URL
Retrieve part of the reference genome for a (HGNC) gene symbol
Retrieve a range of a chromosome by accession number
Retrieve a range of a chromosome by name
Input Please select the GenBank file in plain text format

Please enter the URL of the GenBank file in plain text (including http://)

Please enter the Gene symbol and organism name without spaces and specify the length of the flanking sequences
Note: This uses the NCBI Entrez search engine and is therefore based on the current Entrez assembly for the given organism (GRCh38/hg38 for human).
Gene symbol
Organism name
Number of 5' flanking nucleotides
Number of 3' flanking nucleotides
Please enter the accession number of the chromosome or contig and specify the range
Chromosome accession number
Start position
Stop position
Orientation
Please enter the name of the chromosome and specify the range
Assembly
Chromosome name
Start position
Stop position
Orientation
Help
{% if errors %}

Error output:

  {% for i in errors %}
    {{ i }}
{% endfor %}
{% endif %} {% if ud %}

Output:

Your reference sequence was loaded successfully.
You now can use mutalyzer with the following accession number as reference: {{ ud }}

Download this reference sequence.

{% endif %} {% endblock content %}