{% if not standalone %} {% extends "base.html" %} {% endif -%}
Please insert the variant description using the HGVS format:
<accession number>.<version number>(<gene symbol>):<sequence type>.<variant description>{% if description %}
{{ parse_error[0] }}
{{ parse_error[1] }}
The "^" indicates the position where the error occurred.
{{ m.description }}
{% elif m.class == "warning" %}{{ m.description }}
{% elif m.class == "information" %}{{ m.description }}
{% elif m.class == "debug" %}{{ m.description }}
{% endif %} {% endfor %} {% endif %} {% if summary == "0 Errors, 0 Warnings." %}{{ summary }}
{% else %}{{summary}}
{% endif %} {% if not parse_error %}Raw variant {{ loop.index }}: {{ i[0] }}
{{ i[1] }}{% endfor %} {% endif %} {% if browserLink %}
{{ i[2] }}
View original variant in UCSC Genome Browser
{% endif %} {% if genomicDescription %} {% if genomicDNA %}(Not for use in LSDBs in case of protein-coding transcripts).
{% endif %} {% endif %} {% if chromDescription %}{{ chromDescription }}
{{ i }}
{{ i }}
{%- for i in oldProtein -%} {{-i |safe -}}
{%- endfor -%}
{%- for i in newProtein -%} {{- i|safe -}}{% else %}
{%- endfor -%}
No change: predicted protein (not shown) equals reference protein.
{% endif %} {% if altStart %}{%- for i in altProtein -%} {{- i|safe -}}{% else %}
{%- endfor -%}
No change: predicted protein (not shown) equals reference protein.
{% endif %} {% endif %} {% endif %} {% endif %}{# transcriptInfo #} {% if restrictionSites %}Raw variant | Created | Deleted |
---|---|---|
{{ loop.index }} | {% for j in i[0] %} {{ j }}{{ ',' if not loop.last }} {% endfor %} | {% for j in i[1] %} {{ j }}{{ ',' if not loop.last }} {% endfor %} |
Genomic description: {{ extractedDescription }}
Number | Start (g.) | Stop (g.) | Start {{ '(c.)' if transcriptCoding else '(n.)' }} | Stop {{ '(c.)' if transcriptCoding else '(n.)' }} |
---|---|---|---|---|
{{ loop.index }} | {% for j in i %}{{ j }} | {% endfor %}
g. | c. | |
---|---|---|
Start | {{ cdsStart_g }} | {{ cdsStart_c }} |
Stop | {{ cdsStop_g }} | {{ cdsStop_c }} |
Download this reference sequence file: {{ reference_filename }}
{% endif %}Name | ID | Locus tag | Product | Link method |
---|---|---|---|---|
{{ j if j else '' }} | {% endfor %}