{% if not standalone %}{% extends "base.html" %}{% endif -%}
Overview of the raw variants:
{% for i in visualisation %}Raw variant {{ loop.index }}: {{ i[0] }}
{{ i[1] }}{% endfor %} {% endif %} {% if browserLink %} {% endif %}
{{ i[2] }}
{{ parse_error[0] }}
{{ parse_error[1] }}
The "^" indicates the position where the error occurred.
{% endif %} {% if genomicDescription %} {% if genomicDNA %}Genomic description:
{% else %}Description relative to transcription start:
(Not for use in LSDBs in case of protein-coding transcripts).
Alternative chromosomal position:
{{ chromDescription }}
{% endif %} {% if descriptions %}Affected transcripts:
{% for i in descriptions %}
{% if i.endswith('?') %}
{{ i }}
{% else %}
{{ i }}
{% endif %}
{% endfor %}
Affected proteins:
{% for i in protDescriptions %}
{{ i }}
{% endfor %}
Detailed information about the selected transcript:
Reference protein:
{%- for i in oldProtein -%} {{- i|safe -}}
{%- endfor -%}
Protein predicted from variant coding sequence:
{% if newProtein %}{%- for i in newProtein -%} {{- i|safe -}}{% else %}
{%- endfor -%}
No change: Predicted protein (not shown) equals reference protein.
{% endif %} {% if altStart %}Alternative protein using start codon {{ altStart }}
{% if altProtein %}{%- for i in altProtein -%} {{- i|safe -}}{% else %}
{%- endfor -%}
No change: Predicted protein (not shown) equals reference protein.
{% endif %} {% endif %} {% endif %}Exon information:
Number | Start (g.) | Stop (g.) | Start {{ '(c.)' if transcriptCoding else '(n.)' }} | Stop {{ '(c.)' if transcriptCoding else '(n.)' }} |
{{ loop.index }} | {% for j in i %}{{ j }} | {% endfor %}
CDS information:
g. | c. | |
Start | {{ cdsStart_g }} | {{ cdsStart_c }} |
Stop | {{ cdsStop_g }} | {{ cdsStop_c }} |
Effects on Restriction sites:
Raw variant | Created | Deleted |
{{ loop.index }} | {% for j in i[0] %} {{ j }}{{ ',' if not loop.last }} {% endfor %} | {% for j in i[1] %} {{ j }}{{ ',' if not loop.last }} {% endfor %} |
Legend:
Name | ID | Locus tag | Product | Link method |
{{ j if j else '' }} | {% endfor %}
Links:
Download this reference sequence file: {{ reference_filename }}
{% endif %} {% if extractedDescription %}Experimental services:
Genomic description: {{ extractedDescription }}
Protein description: {{ extractedProtein }}
{% endif %} {% endif %} {% endblock content %}