{% extends "base.html" %} {% set active_page = "description-extractor" %} {% set page_title = "Variant Description Extractor" %} {% block content %}

Note that this is an experimental service.

Extract the HGVS variant description from a reference sequence and an observed sequence. For now, we require the user to fill in two sequences. After the testing phase, we plan to use the underlying algorithm for:

Please supply a reference sequence and an observed sequence.

Reference sequence:

Example: ATGATGATCAGATACAGTGTGATACAGGTAGTTAGACAA



Observed sequence:

Example: ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA



Help
{% if description is defined %}

Variant Description Extractor results:

{% for m in messages %}

{{ m.description|e }}

{% endfor %}

{{ summary|e }}

{% if not errors %}

Genomic description:

g.{{ description|e }}

Overview of the raw variants:

{% for i in visualisation %} {% for j in i %} {% endfor %} {% endfor %}
Start End Type Deleted Inserted Shift Description
{{ j|e }}
{% endif %} {% endif %} {% endblock content %}