{% extends "base.html" %} {% set active_page = "description-extractor" %} {% set page_title = "Variant Description Extractor" %} {% block content %}

Note that this is an experimental service.

Extract the HGVS variant description from a reference sequence and an observed sequence. For now, we require the user to fill in two sequences. After the testing phase, we plan to use the underlying algorithm for:

Please supply a reference sequence and an observed sequence.

Reference sequence

Example: ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA

Observed sequence

Example: ATGATTTGATCAGATACATGTGATACCGGTAGTTAGGACAA

Help
{% if description %}

Variant Description Extractor results:

{% for m in messages %} {% if m.class == "error" %} {% elif m.class == "warning" %} {% endif %} {% endfor %} {% if summary == "0 Errors, 0 Warnings."%} {% endif %}
{{ m.description }}
{{ m.description }}
{{ summary }}
{% if not errors %}

Genomic description:

g.{{ description }}

Overview of the raw variants:

{% for raw_var in raw_vars %} {% endfor %}
Start End Type Deleted Inserted Shift Description
{{ raw_var.start }} {{ raw_var.end }} {{ raw_var.type }} {{ raw_var.deleted }} {{ raw_var.inserted }} {{ raw_var.shift }} {{ raw_var.hgvs }}
{% endif %} {% endif %} {% endblock content %}