Commits · master · Mirrors / extractor

27 Jun, 2017 3 commits
- Preparing for new release · 9bea5f16
  jkvis authored Jun 27, 2017
  
  9bea5f16
- Fixed requirements.txt · eeaac697
  jkvis authored Jun 27, 2017
  
  eeaac697
- Added crossmapper requirement · 62fba3b5
  jkvis authored Jun 27, 2017
  
  62fba3b5
20 Jun, 2017 3 commits
- Removed Python 3.6 · 7807d1f6
  jkvis authored Jun 20, 2017
  
  7807d1f6
- Added Python 3.6 · e87022c0
  jkvis authored Jun 20, 2017
  
  e87022c0
- Add requirements.txt to travis · 6c58ed71
  jkvis authored Jun 20, 2017
  
  6c58ed71
19 Jun, 2017 2 commits
- Bowos fix · 6cb0a0c8
  jkvis authored Jun 19, 2017
  
  6cb0a0c8
- temp. Fixed duplicates in transpositions: this needs re-thinking when refactoring · dffb83c5
  jkvis authored Jun 19, 2017
  
  dffb83c5
20 Sep, 2016 1 commit
- Removed deletions from repeat structure description · 98670dd8
  jkvis authored Sep 20, 2016
  
  98670dd8
14 Sep, 2016 4 commits
- Added repeat structure variant · 4233b4c4
  jkvis authored Sep 14, 2016
  
  4233b4c4
- Testing · 716433c2
  jkvis authored Sep 14, 2016
  
  716433c2
- Fixed integer positions · 008ba894
  jkvis authored Sep 14, 2016
  
  008ba894
- Added the Crossmapper module · 3929f40f
  jkvis authored Sep 14, 2016
  
  3929f40f
13 Sep, 2016 3 commits
- Fixed description for no repeat structures · 0853cced
  jkvis authored Sep 13, 2016
  
  0853cced
- Fixed repeat structure within variants · fba10c7e
  jkvis authored Sep 13, 2016
  
  fba10c7e
- Fixed separate masking and repeat extraction · 57113309
  jkvis authored Sep 13, 2016
  
  57113309
12 Sep, 2016 4 commits
- Testing · ee5057eb
  jkvis authored Sep 12, 2016
  
  ee5057eb
- Fixed indexing outside repeat structure · 616db5a6
  jkvis authored Sep 12, 2016
  
  616db5a6
- Added start and end repeat structure extraction · b1e22988
  jkvis authored Sep 12, 2016
  
  b1e22988
- Added repeat extractor · 82e1ba61
  jkvis authored Sep 12, 2016
  
  82e1ba61
28 Jun, 2016 1 commit
- Frame 2 was incidentally called frame 1. · f8c3a266
  Jeroen F.J. Laros authored Jun 28, 2016
  
  f8c3a266
21 Jun, 2016 3 commits
- Preparing for new release · 14c8718a
  jkvis authored Jun 21, 2016
  
  14c8718a
- Fixed potential bug with inserted suffix in frame shifts · 1bce474c
  jkvis authored Jun 21, 2016
  
  1bce474c
- Fixed an error in inserted prefix sequences in frame shifts · f37c14b8
  jkvis authored Jun 21, 2016
  
  f37c14b8
08 Mar, 2016 3 commits
- Merge pull request #16 from mutalyzer/packaging · 365951f4
  jkvis authored Mar 08, 2016
```
Packaging fix
```
  365951f4
- Fix broken reference to README.md · 47800bba
  Martijn Vermaat authored Mar 08, 2016
  
  47800bba
- Release version 2.3.2 after broken PyPI upload · 96811887
  Martijn Vermaat authored Mar 08, 2016
  
  96811887
07 Mar, 2016 13 commits
- Removed version info/copyright from source comments · e64af707
  jkvis authored Mar 07, 2016
  
  e64af707
- Merge pull request #13 from mutalyzer/biopython-no-version · 593bc11d
  jkvis authored Mar 07, 2016
```
Don't require a specific BioPython version
```
  593bc11d
- Don't require a specific BioPython version · 5cd35674
  Martijn Vermaat authored Mar 07, 2016
```
It's not necessary to pin the BioPython dependency on a specific
version, but it may result in issues with dependency resolving in
projects using the description extractor.

http://python-packaging-user-guide.readthedocs.org/en/latest/requirements/
```
  5cd35674
- Fixed missing inserted sequence for inversions · 353d910f
  jkvis authored Mar 07, 2016
  
  353d910f
- Merge pull request #11 from mutalyzer/describe_protein · 0ad3392d
  jkvis authored Mar 07, 2016
```
Describe protein
```
  0ad3392d
- Added python 3.5 to travis · b2de445d
  jkvis authored Mar 07, 2016
  
  b2de445d
- merged .travis.yml · a3a2b8da
  jkvis authored Mar 07, 2016
  
  a3a2b8da
- merged .travis.yml · faa52bef
  jkvis authored Mar 07, 2016
  
  faa52bef
- merged .travis.yml · ac524f65
  jkvis authored Mar 07, 2016
  
  ac524f65
- Protein description tests · 827445d0
  jkvis authored Mar 07, 2016
  
  827445d0
- Merge pull request #12 from mutalyzer/travis-no-sudo · 674bf74a
  jkvis authored Mar 07, 2016
```
Don't require sudo on Travis
```
  674bf74a
- Don't require sudo on Travis · a1df8187
  Martijn Vermaat authored Mar 07, 2016
  
  a1df8187
- Added python 3.5 · 677ed7c0
  jkvis authored Mar 07, 2016
  
  677ed7c0