Commits · 774a59db6e649ab541f2f19e17a0a3948938f87c · Mirrors / extractor

21 Aug, 2014 1 commit
- Updated cut-off scheme · 774a59db
  J.K. Vis authored Aug 21, 2014
  
  774a59db
06 Aug, 2014 1 commit
- Fixed length by one off in debug.cc · cda64b6f
  jkvis authored Aug 06, 2014
  
  cda64b6f
31 Jul, 2014 1 commit
- Fixed bug in transposition extraction: for small (deletions/)insertions · 1027984b
  jkvis authored Jul 31, 2014
  
  1027984b
29 Jul, 2014 1 commit
- Added documentation and source comments · f9bc6c5e
  jkvis authored Jul 29, 2014
  
  f9bc6c5e
23 Jul, 2014 1 commit
- Refactoring done · f5fd3eb3
  J.K. Vis authored Jul 23, 2014
  
  f5fd3eb3
28 Feb, 2014 2 commits
- Transpositions with correct indices · 7015c0ed
  jkvis authored Feb 28, 2014
  
  7015c0ed
- transposition extraction module · 706a1664
  jkvis authored Feb 28, 2014
  
  706a1664
05 Feb, 2014 1 commit
- Better transposition descriptions: still some work to do? · b138420d
  jkvis authored Feb 05, 2014
  
  b138420d
03 Feb, 2014 3 commits
- Second run hg18 vs hg19 · 7712a54e
  jkvis authored Feb 03, 2014
  
  7712a54e
- Added debug logging · 2ff57eb2
  jkvis authored Feb 03, 2014
  
  2ff57eb2
- Debugging the transpositions · a4006f14
  jkvis authored Feb 03, 2014
  
  a4006f14
20 Sep, 2013 1 commit
- More on the test suite · e111d434
  jkvis authored Sep 20, 2013
  
  e111d434
19 Sep, 2013 3 commits
- Some minor fixes for the matches in the variant list (prefixes and suffixes)... · aa1efe35
  jkvis authored Sep 19, 2013
```
Some minor fixes for the matches in the variant list (prefixes and suffixes) and started on constructing a test suite
```
  aa1efe35
- First working version of transpositions. Not very thoroughly tested! · 7bc1c507
  jkvis authored Sep 19, 2013
  
  7bc1c507
- From now on the variant list also contains the matched parts of the strings · 5101dc12
  jkvis authored Sep 19, 2013
  
  5101dc12
17 Sep, 2013 1 commit
- Support for transpositions · 3ff2e689
  jkvis authored Sep 17, 2013
  
  3ff2e689
29 Jul, 2013 2 commits
- Added boilerplate code for packaging. · 013903d3
  Laros authored Jul 29, 2013
  
  013903d3
- Resolved a segfault in LCS_k when the sample string becomes to small to partition in k-mers · 00e5c916
  jkvis authored Jul 29, 2013
  
  00e5c916
25 Jul, 2013 3 commits
- Version 1.03a · a750b0a7
  jkvis authored Jul 25, 2013
  
  a750b0a7
- Revert "Version 1.03a: prefix/suffix snooping; no IUPAC matching; nice... · 878e84a7
  jkvis authored Jul 25, 2013
```
Revert "Version 1.03a: prefix/suffix snooping; no IUPAC matching; nice 2D-array allocation; new SWIG interface"

This reverts commit dcc0e6b0.
```
  878e84a7
- Version 1.03a: prefix/suffix snooping; no IUPAC matching; nice 2D-array... · dcc0e6b0
  jkvis authored Jul 25, 2013
```
Version 1.03a: prefix/suffix snooping; no IUPAC matching; nice 2D-array allocation; new SWIG interface
```
  dcc0e6b0
24 Jul, 2013 1 commit
- Initial commit · bcd01444
  jkvis authored Jul 24, 2013
  
  bcd01444