Added repeat structure variant

extractor/describe.py

@@ -463,7 +463,7 @@ def describe_repeats(reference, sample, units):
         repeat += 1
 
     if len(variant_list) > 0 or len(repeats) > 0:
-        description.append(DNAVar(start=reference_start + 1,end=reference_end,sample_start=sample_start,sample_end=sample_end,type='delins',inserted=seq_list))
+        description.append(DNAVar(start=reference_start + 1,end=reference_end,sample_start=sample_start,sample_end=sample_end,type='struct',inserted=seq_list))
 
         suffix = describe_dna(reference[reference_end:], sample[sample_end:])
         for variant in suffix:

extractor/variant.py

@@ -261,6 +261,8 @@ class DNAVar(object):
 
             if self.type in ('ins', 'delins'):
                 return description + str(self.inserted)
+            elif self.type == 'struct':
+                return str(self.inserted)
             return description
 
         return description + '{0}>{1}'.format(self.deleted, self.inserted)