Commit 223638d0 authored by J.K. Vis's avatar J.K. Vis
Browse files

Added frame shift table

parent 7e7264a8
......@@ -8,8 +8,8 @@
// FILE INFORMATION:
// File: extractor.cc (depends on extractor.h)
// Author: Jonathan K. Vis
// Revision: 2.1.6
// Date: 2014/09/17
// Revision: 2.1.7
// Date: 2014/12/15
// *******************************************************************
// DESCRIPTION:
// This library can be used to generete HGVS variant descriptions as
......
......@@ -8,8 +8,8 @@
// FILE INFORMATION:
// File: extractor.h (implemented in extractor.cc)
// Author: Jonathan K. Vis
// Revision: 2.1.6
// Date: 2014/09/17
// Revision: 2.1.7
// Date: 2014/12/15
// *******************************************************************
// DESCRIPTION:
// This library can be used to generate HGVS variant descriptions as
......@@ -30,11 +30,14 @@
#endif
#include "frame_shift.h"
namespace mutalyzer
{
// Version string for run-time identification.
static char const* const VERSION = "2.1.6";
static char const* const VERSION = "2.1.7";
// The character type used for all strings. For now it should just be
......@@ -52,9 +55,12 @@ typedef char char_t;
// These constants can be used to specify the type of string to be
// extracted. The extractor is primarily focussed on DNA/RNA. When
// TYPE_PROTEIN (or another value) is used no complement string is
// constructed and no reverse complement is calculated.
// constructed and no reverse complement is calculated. For
// TYPE_PROTEIN frame shift detection is applied on
// deletions/insertions.
static int const TYPE_DNA = 0; // DNA/RNA (default)
static int const TYPE_PROTEIN = 1; // Protein or other strings
static int const TYPE_PROTEIN = 1; // Protein
static int const TYPE_OTHER = 2; // Other strings
// These constants can be used to deterimine the type of variant.
......
......@@ -8,8 +8,8 @@
// FILE INFORMATION:
// File: extractor.i (SWIG interface file)
// Author: Jonathan K. Vis
// Revision: 2.1.6
// Date: 2014/09/17
// Revision: 2.1.7
// Date: 2014/12/15
// *******************************************************************
// DESCRIPTION:
// Defines the SWIG interface for the Extractor library for use in
......@@ -32,7 +32,7 @@ namespace mutalyzer
{
// Version string for run-time identification.
static char const* const VERSION = "2.1.6";
static char const* const VERSION = "2.1.7";
// The character type used for all strings. For now it should just be
// a char.
......@@ -41,9 +41,12 @@ typedef char char_t;
// These constants can be used to specify the type of string to be
// extracted. The extractor is primarily focussed on DNA/RNA. When
// TYPE_PROTEIN (or another value) is used no complement string is
// constructed and no reverse complement is calculated.
// constructed and no reverse complement is calculated. For
// TYPE_PROTEIN frame shift detection is applied on
// deletions/insertions.
static int const TYPE_DNA = 0;
static int const TYPE_PROTEIN = 1;
static int const TYPE_OTHER = 2;
// These constants can be used to deterimine the type of variant.
// Substitution covers most: deletions, insertions, substitutions, and
......
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