Commit 1bce474c authored by jkvis's avatar jkvis
Browse files

Fixed potential bug with inserted suffix in frame shifts

parent f37c14b8
...@@ -370,9 +370,9 @@ def describe_protein(s1, s2, codon_table=1): ...@@ -370,9 +370,9 @@ def describe_protein(s1, s2, codon_table=1):
s2_swig[0], s2_swig[1], extractor.TYPE_PROTEIN, codons_swig[0]) s2_swig[0], s2_swig[1], extractor.TYPE_PROTEIN, codons_swig[0])
variants = extracted.variants variants = extracted.variants
for variant in variants: #for variant in variants:
print_var(variant) # print_var(variant)
print() #print()
index = 0 index = 0
while index < len(variants): while index < len(variants):
...@@ -405,7 +405,7 @@ def describe_protein(s1, s2, codon_table=1): ...@@ -405,7 +405,7 @@ def describe_protein(s1, s2, codon_table=1):
# NOTE: Perhaps use trans_open, trans_close to ... # NOTE: Perhaps use trans_open, trans_close to ...
index += 1 index += 1
if last_end != variant.sample_end: if last_end < variant.sample_end:
seq_list.append(AISeq(s2[last_end:variant.sample_end])) seq_list.append(AISeq(s2[last_end:variant.sample_end]))
var = var_to_protein_var(s1, s2, variant, seq_list, var = var_to_protein_var(s1, s2, variant, seq_list,
......
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