Fixed integer positions

008ba894 · jkvis · 3929f40f · 008ba894
Commit 008ba894 authored Sep 14, 2016 by jkvis
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Showing with 4 additions and 4 deletions

extractor/describe.py extractor/describe.py +4 -4

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--- a/extractor/describe.py
+++ b/extractor/describe.py
@@ -477,10 +477,10 @@ def describe_repeats(reference, sample, units):
    cm = Crossmap([reference_start + 1, reference_end], [], 1)
    for variant in description:
        for inserted in variant.inserted:
-            inserted.start = cm.tuple2string(cm.g2x(inserted.start))
-            inserted.end = cm.tuple2string(cm.g2x(inserted.end))
-        variant.start = cm.tuple2string(cm.g2x(variant.start))
-        variant.end = cm.tuple2string(cm.g2x(variant.end))
+            inserted.start = cm.tuple2string(cm.g2x(int(inserted.start)))
+            inserted.end = cm.tuple2string(cm.g2x(int(inserted.end)))
+        variant.start = cm.tuple2string(cm.g2x(int(variant.start)))
+        variant.end = cm.tuple2string(cm.g2x(int(variant.end)))

    return description, reference_start, reference_end