Commits · 7f03f1efcc9c233573a77aad0c2fa954268129f2 · Mirrors / biopet.biopet

10 Apr, 2017 1 commit
- Fixing null pointer · 7f03f1ef
  Peter van 't Hof authored Apr 10, 2017
  
  7f03f1ef
09 Apr, 2017 1 commit
- trying to fix weird error in testing · 78159ed9
  Peter van 't Hof authored Apr 09, 2017
  
  78159ed9
24 Feb, 2017 1 commit
- Remove old summary code and fixed dependencies for report · 166530dc
  Peter van 't Hof authored Feb 24, 2017
  
  166530dc
16 Feb, 2017 1 commit
- Start to convert report class · f8f8af38
  Peter van 't Hof authored Feb 16, 2017
  
  f8f8af38
09 Feb, 2017 1 commit
- Rename root to parent · dcff73d6
  Peter van 't Hof authored Feb 09, 2017
  
  dcff73d6
19 Jan, 2017 1 commit
- add extra warning in case of duplicate target names · b22079f4
  Sander Bollen authored Jan 19, 2017
  
  b22079f4
18 Jan, 2017 1 commit
- harmonize summary keys for flagstats · e6ed0297
  Sander Bollen authored Jan 18, 2017
  
  e6ed0297
05 Jan, 2017 1 commit
- Renamed class because of decrapation · 8265ffec
  Peter van 't Hof authored Jan 05, 2017
  
  8265ffec
22 Nov, 2016 2 commits
- Fixed typo · f110f436
  Peter van 't Hof authored Nov 22, 2016
  
  f110f436
- Format fixes · 16fafb4e
  Peter van 't Hof authored Nov 22, 2016
  
  16fafb4e
21 Nov, 2016 1 commit
- Add bamstats to summary · b576d9da
  Peter van 't Hof authored Nov 21, 2016
  
  b576d9da
19 Nov, 2016 1 commit
- Moving flagstats from bamstats to summary · f418cc1a
  Peter van 't Hof authored Nov 19, 2016
  
  f418cc1a
18 Nov, 2016 1 commit
- Add basic version of bamstats to pipeline · adc39c81
  Peter van 't Hof authored Nov 18, 2016
  
  adc39c81
25 Oct, 2016 1 commit
- For for BIOPET-389 · abb1f25e
  Peter van 't Hof authored Oct 25, 2016
  
  abb1f25e
02 Jun, 2016 1 commit
- autostyle fixes · 92a3a1b7
  Sander Bollen authored Jun 02, 2016
  
  92a3a1b7
26 May, 2016 1 commit
- sort input bed and fix test · c708df45
  Sander Bollen authored May 26, 2016
  
  c708df45
25 May, 2016 1 commit
- change ALL licenses across all files. · 55b1b7dd
  Sander Bollen authored May 25, 2016
  
  55b1b7dd
17 May, 2016 1 commit
- Fix format · d08b6c72
  Peter van 't Hof authored May 17, 2016
  
  d08b6c72
14 May, 2016 2 commits
- Improved message · 1f17e7c6
  Peter van 't Hof authored May 14, 2016
  
  1f17e7c6
- Added a precheck when using bedfiles with wrong contig in there · 04ba5a27
  Peter van 't Hof authored May 14, 2016
  
  04ba5a27
11 May, 2016 1 commit
- Added bedtools sorted flag as default · 9f156daf
  Peter van 't Hof authored May 11, 2016
  
  9f156daf
27 Apr, 2016 1 commit
- Move public to root · 49517b11
  Peter van 't Hof authored Apr 27, 2016
  
  49517b11
29 Jan, 2016 1 commit
- wgs and rna metrics now got config value to enable/disable them · 64134d46
  Peter van 't Hof authored Jan 29, 2016
  
  64134d46
08 Jan, 2016 1 commit
- Fixed rna metrics · 565f3979
  Peter van 't Hof authored Jan 08, 2016
  
  565f3979
15 Dec, 2015 2 commits
- Fix wrong metrics addition in BamMetrics · ca59e8ef
  bow authored Dec 15, 2015
```
The CollectHsMetrics was incorrectly added as the
CollectTargetedPcrMetrics. This commit fixes it.
```
  ca59e8ef
- Fixed dir of samtools flagstat · 96c56bc1
  Peter van 't Hof authored Dec 15, 2015
  
  96c56bc1
20 Nov, 2015 1 commit
- Added vcf stats for each region bed file · 991c07af
  Peter van 't Hof authored Nov 20, 2015
  
  991c07af
29 Oct, 2015 1 commit
- Added reference to bamMetrics · 6ac2ce38
  Peter van 't Hof authored Oct 29, 2015
  
  6ac2ce38
27 Oct, 2015 2 commits
- Change titles · 99a3ba0a
  Peter van 't Hof authored Oct 27, 2015
  
  99a3ba0a
- Switch -a and -b for bedtools coverage · e27c05d0
  Peter van 't Hof authored Oct 27, 2015
  
  e27c05d0
21 Oct, 2015 1 commit
- Fix unit testing · 4e87ca4c
  Peter van 't Hof authored Oct 21, 2015
  
  4e87ca4c
20 Oct, 2015 4 commits
- More piping for target flagstat · bf6c2be4
  Peter van 't Hof authored Oct 20, 2015
  
  bf6c2be4
- Use normal pipes instead of fifo pipes · 5421af11
  Peter van 't Hof authored Oct 20, 2015
  
  5421af11
- Remove fixme · 72de7b9d
  Peter van 't Hof authored Oct 20, 2015
  
  72de7b9d
- Added piping support to coverage script · 03df7987
  Peter van 't Hof authored Oct 20, 2015
  
  03df7987
18 Sep, 2015 2 commits
- Fixed case class · bd6eae2c
  Peter van 't Hof authored Sep 18, 2015
  
  bd6eae2c
- Add input files to pipelines · 4875e508
  Peter van 't Hof authored Sep 18, 2015
  
  4875e508
17 Sep, 2015 1 commit
- Fix sample bamMetrics · 2d950663
  Peter van 't Hof authored Sep 17, 2015
  
  2d950663
13 Sep, 2015 2 commits
- Move scripts to bammetrics · eceac8c1
  Peter van 't Hof authored Sep 13, 2015
  
  eceac8c1
- Fix pipeline without framework · f3343df9
  Peter van 't Hof authored Sep 13, 2015
  
  f3343df9