Commit f956b6fc authored by Peter van 't Hof's avatar Peter van 't Hof

Public is now the independent

parent 82d03176
......@@ -2,109 +2,19 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetRoot</artifactId>
<version>0.2.0-DEV</version>
<packaging>pom</packaging>
<name>BiopetRoot</name>
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Biopet</artifactId>
<version>0.2.0-DEV</version>
<relativePath>public</relativePath>
</parent>
<modules>
<module>public</module>
<module>protected</module>
</modules>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<includes>
<include>**/*</include>
</includes>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.scala-tools</groupId>
<artifactId>maven-scala-plugin</artifactId>
<version>2.15.2</version>
<executions>
<execution>
<id>scala-compile</id>
<goals>
<goal>compile</goal>
<goal>testCompile</goal>
</goals>
<configuration>
<args>
<arg>-dependencyfile</arg>
<arg>${project.build.directory}/.scala_dependencies</arg>
<arg>-deprecation</arg>
<arg>-feature</arg>
</args>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.5</version>
<configuration>
<archive>
<manifest>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<showDeprecation>true</showDeprecation>
</configuration>
</plugin>
<plugin>
<groupId>org.scalariform</groupId>
<artifactId>scalariform-maven-plugin</artifactId>
<version>0.1.4</version>
<executions>
<execution>
<phase>process-sources</phase>
<goals>
<goal>format</goal>
</goals>
<configuration>
<rewriteArrowSymbols>false</rewriteArrowSymbols>
<alignParameters>true</alignParameters>
<alignSingleLineCaseStatements_maxArrowIndent>40
</alignSingleLineCaseStatements_maxArrowIndent>
<alignSingleLineCaseStatements>true</alignSingleLineCaseStatements>
<compactStringConcatenation>false</compactStringConcatenation>
<compactControlReadability>false</compactControlReadability>
<doubleIndentClassDeclaration>false</doubleIndentClassDeclaration>
<formatXml>true</formatXml>
<indentLocalDefs>false</indentLocalDefs>
<indentPackageBlocks>true</indentPackageBlocks>
<indentSpaces>2</indentSpaces>
<placeScaladocAsterisksBeneathSecondAsterisk>false
</placeScaladocAsterisksBeneathSecondAsterisk>
<preserveDanglingCloseParenthesis>true</preserveDanglingCloseParenthesis>
<preserveSpaceBeforeArguments>false</preserveSpaceBeforeArguments>
<rewriteArrowSymbols>false</rewriteArrowSymbols>
<spaceBeforeColon>false</spaceBeforeColon>
<spaceInsideBrackets>false</spaceInsideBrackets>
<spaceInsideParentheses>false</spaceInsideParentheses>
<spacesWithinPatternBinders>true</spacesWithinPatternBinders>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>
......@@ -2,14 +2,11 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>Biopet</artifactId>
<groupId>nl.lumc.sasc</groupId>
<name>Biopet</name>
<packaging>pom</packaging>
<parent>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetRoot</artifactId>
<version>0.2.0-DEV</version>
<relativePath>../</relativePath>
</parent>
<version>0.2.0-DEV</version>
<modules>
<module>biopet-framework</module>
<module>biopet-public-package</module>
......@@ -20,4 +17,133 @@
<module>sage</module>
<module>yamsvp</module>
</modules>
<properties>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
</properties>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<includes>
<include>**/*</include>
</includes>
</resource>
</resources>
<plugins>
<plugin>
<groupId>org.scala-tools</groupId>
<artifactId>maven-scala-plugin</artifactId>
<version>2.15.2</version>
<executions>
<execution>
<id>scala-compile</id>
<goals>
<goal>compile</goal>
<goal>testCompile</goal>
</goals>
<configuration>
<args>
<arg>-dependencyfile</arg>
<arg>${project.build.directory}/.scala_dependencies</arg>
<arg>-deprecation</arg>
<arg>-feature</arg>
</args>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>2.5</version>
<configuration>
<archive>
<manifest>
<addDefaultImplementationEntries>true</addDefaultImplementationEntries>
<addDefaultSpecificationEntries>true</addDefaultSpecificationEntries>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>2.3.2</version>
<configuration>
<showDeprecation>true</showDeprecation>
</configuration>
</plugin>
<plugin>
<groupId>org.scalariform</groupId>
<artifactId>scalariform-maven-plugin</artifactId>
<version>0.1.4</version>
<executions>
<execution>
<phase>process-sources</phase>
<goals>
<goal>format</goal>
</goals>
<configuration>
<rewriteArrowSymbols>false</rewriteArrowSymbols>
<alignParameters>true</alignParameters>
<alignSingleLineCaseStatements_maxArrowIndent>40
</alignSingleLineCaseStatements_maxArrowIndent>
<alignSingleLineCaseStatements>true</alignSingleLineCaseStatements>
<compactStringConcatenation>false</compactStringConcatenation>
<compactControlReadability>false</compactControlReadability>
<doubleIndentClassDeclaration>false</doubleIndentClassDeclaration>
<formatXml>true</formatXml>
<indentLocalDefs>false</indentLocalDefs>
<indentPackageBlocks>true</indentPackageBlocks>
<indentSpaces>2</indentSpaces>
<placeScaladocAsterisksBeneathSecondAsterisk>false
</placeScaladocAsterisksBeneathSecondAsterisk>
<preserveDanglingCloseParenthesis>true</preserveDanglingCloseParenthesis>
<preserveSpaceBeforeArguments>false</preserveSpaceBeforeArguments>
<rewriteArrowSymbols>false</rewriteArrowSymbols>
<spaceBeforeColon>false</spaceBeforeColon>
<spaceInsideBrackets>false</spaceInsideBrackets>
<spaceInsideParentheses>false</spaceInsideParentheses>
<spacesWithinPatternBinders>true</spacesWithinPatternBinders>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>pl.project13.maven</groupId>
<artifactId>git-commit-id-plugin</artifactId>
<version>2.1.10</version>
<executions>
<execution>
<goals>
<goal>revision</goal>
</goals>
</execution>
</executions>
<configuration>
<prefix>git</prefix>
<dateFormat>dd.MM.yyyy '@' HH:mm:ss z</dateFormat>
<verbose>false</verbose>
<useNativeGit>true</useNativeGit>
<skipPoms>false</skipPoms>
<generateGitPropertiesFile>true</generateGitPropertiesFile>
<generateGitPropertiesFilename>src/main/resources/git.properties</generateGitPropertiesFilename>
<failOnNoGitDirectory>false</failOnNoGitDirectory>
<abbrevLength>7</abbrevLength>
<skip>false</skip>
<excludeProperties></excludeProperties>
<gitDescribe>
<skip>false</skip>
<always>false</always>
<abbrev>7</abbrev>
<dirty>-dirty</dirty>
<forceLongFormat>false</forceLongFormat>
</gitDescribe>
</configuration>
</plugin>
</plugins>
</build>
</project>
\ No newline at end of file
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