Commit f7937990 authored by Peter van 't Hof's avatar Peter van 't Hof

style changes

parent 9cb010e9
...@@ -2,15 +2,15 @@ package nl.lumc.sasc.biopet.extensions ...@@ -2,15 +2,15 @@ package nl.lumc.sasc.biopet.extensions
import java.io.File import java.io.File
import nl.lumc.sasc.biopet.core.{BiopetCommandLineFunction, Version} import nl.lumc.sasc.biopet.core.{ BiopetCommandLineFunction, Version }
import nl.lumc.sasc.biopet.utils.config.Configurable import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{Input, Output} import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
import scala.util.matching.Regex import scala.util.matching.Regex
/** /**
* Created by pjvan_thof on 17-5-16. * Created by pjvan_thof on 17-5-16.
*/ */
class Awk(val root: Configurable) extends BiopetCommandLineFunction with Version { class Awk(val root: Configurable) extends BiopetCommandLineFunction with Version {
executable = config("exe", default = "awk", freeVar = false) executable = config("exe", default = "awk", freeVar = false)
......
...@@ -7,8 +7,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable ...@@ -7,8 +7,8 @@ import nl.lumc.sasc.biopet.utils.config.Configurable
import org.broadinstitute.gatk.utils.commandline.{ Input, Output } import org.broadinstitute.gatk.utils.commandline.{ Input, Output }
/** /**
* Created by pjvan_thof on 17-5-16. * Created by pjvan_thof on 17-5-16.
*/ */
class GtfToGenePred(val root: Configurable) extends BiopetCommandLineFunction { class GtfToGenePred(val root: Configurable) extends BiopetCommandLineFunction {
executable = config("exe", default = "gtfToGenePred", freeVar = false) executable = config("exe", default = "gtfToGenePred", freeVar = false)
......
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