Commit f018ba9f authored by Peter van 't Hof's avatar Peter van 't Hof

Adding stdout file back to outputs

parent 2467bc10
...@@ -116,7 +116,7 @@ object WriteDependencies extends Logging with Configurable { ...@@ -116,7 +116,7 @@ object WriteDependencies extends Logging with Configurable {
"depends_on_intermediate" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).exists(files(_).isIntermediate), "depends_on_intermediate" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).exists(files(_).isIntermediate),
"depends_on_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).outputJobNames).distinct, "depends_on_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).outputJobNames).distinct,
"output_used_by_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).inputJobNames).distinct, "output_used_by_jobs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList.flatMap(files(_).inputJobNames).distinct,
"outputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList, "outputs" -> (f.jobOutputFile :: BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList),
"inputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList, "inputs" -> BiopetQScript.safeOutputs(f).getOrElse(Seq()).toList,
"done_files" -> BiopetQScript.safeDoneFiles(f).getOrElse(Seq()).toList, "done_files" -> BiopetQScript.safeDoneFiles(f).getOrElse(Seq()).toList,
"fail_files" -> BiopetQScript.safeFailFiles(f).getOrElse(Seq()).toList, "fail_files" -> BiopetQScript.safeFailFiles(f).getOrElse(Seq()).toList,
......
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