Commit e826cd20 authored by akaljuvee's avatar akaljuvee

when no variants have been found then CatVariants now outputs a file that does...

when no variants have been found then CatVariants now outputs a file that does have VCF-file header lines
parent 091cde73
......@@ -36,6 +36,7 @@ class Delly(val root: Configurable) extends SvCaller {
val catVariants = new CatVariants(this)
catVariants.outputFile = new File(dellyDir, sample + ".delly.vcf")
catVariants.isIntermediate = true
catVariants.writeHeaderToEmptyOutput = true
if (del) {
val delly = new DellyCaller(this)
......
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