Commit d6f1d702 authored by Wai Yi Leung's avatar Wai Yi Leung

Add tinycap to aggregate for scoverage

parent 838dc52e
......@@ -13,3 +13,4 @@ target/
public/target/
protected/target/
site/
*.sc
\ No newline at end of file
......@@ -30,6 +30,7 @@
<module>../public/toucan</module>
<module>../public/shiva</module>
<module>../public/basty</module>
<module>../public/tinycap</module>
<module>../public/biopet-utils</module>
<module>../public/biopet-tools</module>
<module>../public/biopet-tools-extensions</module>
......
import java.io.File
import nl.lumc.sasc.biopet.pipelines.flexiprep.Fastqc
val fastqcStats = new File("/exports/sasc/ethoen-smallrna/analysis/production_strandspecific_mirbase_ensembl_test/samples/102722-001-001/lib_HLF5JBGXX_ATCACG_L004/flexiprep/HLF5JBGXX_102722-001-001_ATCACG_L004_R1.fastq.fastqc/HLF5JBGXX_102722-001-001_ATCACG_L004_R1_fastqc/fastqc_data.txt")
val fastqc = new Fastqc(null)
fastqc.output = fastqcStats
fastqc.foundAdapters
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