Commit cd89147b authored by Peter van 't Hof's avatar Peter van 't Hof

Changed menu

parent 883abceb
......@@ -2,9 +2,8 @@
### Requirements
- Maven 3.3
- Installed Gatk to maven local repository
- Installed Biopet to maven local repository
-
- Installed Gatk to maven local repository (see below)
- Installed Biopet to maven local repository (see below)
To start to develop a biopet pipeline you should have installed Gatk and Biopet in your local maven repository. Do to this execute the follow command.
```bash
......@@ -24,3 +23,12 @@ mvn -DskipTests=true clean install
```
### Basic components
#### Qscript (pipeline)
A basic pipeline would look like this.
#### Extensions (wrappers)
#### Tools (scala programs)
\ No newline at end of file
......@@ -38,8 +38,10 @@ pages:
- 0.3.1: 'release_notes_0.3.1.md'
- 0.3.0: 'release_notes_0.3.0.md'
- Developer:
- 'developer/getting-started.md'
- 'developer/code-style.md'
- Getting Started: 'developer/getting-started.md'
- Code Style: 'developer/code-style.md'
- Scala docs:
- 0.4.0: 'developer/code-style.md'
#- ['developing/Setup.md', 'Developing', 'Setting up your local development environment']
#theme: readthedocs
repo_url: https://github.com/biopet/biopet
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