Commit c7b928d3 authored by Peter van 't Hof's avatar Peter van 't Hof

Fix code style warnings

parent 2c323f38
......@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetGatkExtensions</artifactId>
<packaging>jar</packaging>
......
......@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetGatkPipelines</artifactId>
<packaging>jar</packaging>
......
......@@ -9,7 +9,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetProtectedPackage</artifactId>
<packaging>jar</packaging>
......@@ -57,12 +56,15 @@
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
<!--suppress MavenModelInspection -->
<finalName>Biopet-${project.version}-${git.commit.id.abbrev}</finalName>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<manifestEntries>
<Main-Class>${app.main.class}</Main-Class>
<!--suppress MavenModelInspection -->
<X-Compile-Source-JDK>${maven.compile.source}</X-Compile-Source-JDK>
<!--suppress MavenModelInspection -->
<X-Compile-Target-JDK>${maven.compile.target}</X-Compile-Target-JDK>
</manifestEntries>
</transformer>
......
......@@ -21,7 +21,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Bam2Wig</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BamMetrics</artifactId>
<packaging>jar</packaging>
......
......@@ -26,7 +26,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Basty</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetFramework</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>BiopetPublicPackage</artifactId>
<packaging>jar</packaging>
......@@ -118,12 +117,15 @@
<artifactId>maven-shade-plugin</artifactId>
<version>2.3</version>
<configuration>
<!--suppress MavenModelInspection -->
<finalName>Biopet-${project.version}-${git.commit.id.abbrev}</finalName>
<transformers>
<transformer implementation="org.apache.maven.plugins.shade.resource.ManifestResourceTransformer">
<manifestEntries>
<Main-Class>${app.main.class}</Main-Class>
<!--suppress MavenModelInspection -->
<X-Compile-Source-JDK>${maven.compile.source}</X-Compile-Source-JDK>
<!--suppress MavenModelInspection -->
<X-Compile-Target-JDK>${maven.compile.target}</X-Compile-Target-JDK>
</manifestEntries>
</transformer>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Carp</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Flexiprep</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Gentrap</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Kopisu</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Mapping</artifactId>
<packaging>jar</packaging>
......
......@@ -201,7 +201,6 @@
<failOnNoGitDirectory>false</failOnNoGitDirectory>
<abbrevLength>8</abbrevLength>
<skip>false</skip>
<excludeProperties></excludeProperties>
<gitDescribe>
<skip>false</skip>
<always>false</always>
......@@ -248,9 +247,6 @@
<groupId>org.scoverage</groupId>
<artifactId>scoverage-maven-plugin</artifactId>
<version>${scoverage.plugin.version}</version>
<configuration>
<outputDirectory>${basedir}/target/site/scoverage</outputDirectory>
</configuration>
</plugin>
</plugins>
</reporting>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Sage</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Toucan</artifactId>
<packaging>jar</packaging>
......
......@@ -19,7 +19,6 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Yamsvp</artifactId>
<packaging>jar</packaging>
......
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