Commit ba36a06a authored by Peter van 't Hof's avatar Peter van 't Hof

Fix tabix step

parent fa41ea50
......@@ -187,13 +187,11 @@ class GenerateIndexes(val root: Configurable) extends QScript with BiopetQScript
downloadCmd.isIntermediate = true
add(downloadCmd)
if (curl.output.getName.endsWith(".vcf.gz")) {
val tabix = new Tabix(this)
tabix.input = output
tabix.p = Some("vcf")
tabix.isIntermediate = true
add(tabix)
}
val tabix = new Tabix(this)
tabix.input = output
tabix.p = Some("vcf")
tabix.isIntermediate = true
add(tabix)
cv.variant :+= output
}
......
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