Commit b826db21 authored by Peter van 't Hof's avatar Peter van 't Hof

Remove fragment per exon

parent e27fdd9e
......@@ -129,9 +129,6 @@ class Gentrap(val root: Configurable) extends QScript
lazy val fragmentsPerGene = if (expMeasures().contains(ExpMeasures.FragmentsPerGene))
Some(new FragmentsPerGene(this)) else None
lazy val fragmentsPerExon = if (expMeasures().contains(ExpMeasures.FragmentsPerExon))
Some(new FragmentsPerExon(this)) else None
lazy val baseCounts = if (expMeasures().contains(ExpMeasures.BaseCounts))
Some(new BaseCounts(this)) else None
......@@ -144,7 +141,7 @@ class Gentrap(val root: Configurable) extends QScript
lazy val cufflinksStrict = if (expMeasures().contains(ExpMeasures.CufflinksStrict))
Some(new CufflinksStrict(this)) else None
def executedMeasures = (fragmentsPerGene :: fragmentsPerExon :: baseCounts :: cufflinksBlind ::
def executedMeasures = (fragmentsPerGene :: baseCounts :: cufflinksBlind ::
cufflinksGuided :: cufflinksStrict :: Nil).flatten
/** Whether to do simple variant calling on RNA or not */
......
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