Commit b5c021d7 authored by Peter van 't Hof's avatar Peter van 't Hof

Added pipeline to agregation and executable

parent bffd796d
......@@ -17,6 +17,7 @@
<modules>
<module>../biopet-core</module>
<module>../generate-indexes</module>
<module>../biopet-package</module>
<module>../bammetrics</module>
<module>../flexiprep</module>
......
......@@ -44,6 +44,11 @@
<artifactId>BiopetCore</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>nl.lumc.sasc</groupId>
<artifactId>GenerateIndexes</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>nl.lumc.sasc</groupId>
<artifactId>Flexiprep</artifactId>
......
......@@ -35,7 +35,8 @@ object BiopetExecutableMain extends BiopetExecutable {
nl.lumc.sasc.biopet.pipelines.gwastest.GwasTest,
nl.lumc.sasc.biopet.pipelines.shiva.ShivaVariantcalling,
nl.lumc.sasc.biopet.pipelines.basty.Basty,
nl.lumc.sasc.biopet.pipelines.shiva.Shiva
nl.lumc.sasc.biopet.pipelines.shiva.Shiva,
nl.lumc.sasc.biopet.pipelines.GenerateIndexes
)
def tools: List[MainCommand] = BiopetToolsExecutable.tools
......
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