Commit b2ff131d authored by Peter van 't Hof's avatar Peter van 't Hof

Fixed default aligner in Gentrap

parent 0086a0a5
......@@ -117,6 +117,7 @@ class Gentrap(val root: Configurable) extends QScript
// disable markduplicates since it may not play well with all aligners (this can still be overriden via config)
"mapping" -> Map(
"aligner" -> "gsnap",
"skip_markduplicates" -> true
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