Commit a37fabe7 authored by bow's avatar bow

Merge branch 'fix-genstovcf' into 'develop'

replace semi-solon



See merge request !451
parents ca6efa52 936eabfb
......@@ -155,7 +155,9 @@ object GensToVcf extends ToolCommand {
.make()
}
val infoMap = infoHeaderKeys.map(_.map(x => ("GENS_" + x) -> infoValues.get(infoHeaderMap.get(x))).toMap).getOrElse(Map())
val infoMap = infoHeaderKeys
.map(_.map(x => ("GENS_" + x) -> infoValues.get(infoHeaderMap.get(x)).replaceAll(";", ",")).toMap)
.getOrElse(Map())
val builder = (new VariantContextBuilder)
.chr(cmdArgs.contig)
......
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